Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| DR97_2880 | DR97_3267 | DR97_2880 | DR97_3267 | annotation not available | annotation not available | 0.421 |
| DR97_2880 | DR97_3821 | DR97_2880 | DR97_3821 | annotation not available | annotation not available | 0.683 |
| DR97_2880 | algP | DR97_2880 | DR97_2623 | annotation not available | Alginate regulatory protein; The promoter for a critical alginate biosynthetic gene, AlgD, encoding GDP-mannose dehydrogenase, is activated only under conditions reminiscent of the cystic fibrosis lung (i.e. under high osmolarity), and at least two regulatory genes, AlgP and AlgQ, have been implicated in this activation process | 0.547 |
| DR97_3267 | DR97_2880 | DR97_3267 | DR97_2880 | annotation not available | annotation not available | 0.421 |
| DR97_3267 | DR97_3269 | DR97_3267 | DR97_3269 | annotation not available | annotation not available | 0.592 |
| DR97_3267 | DR97_3821 | DR97_3267 | DR97_3821 | annotation not available | annotation not available | 0.408 |
| DR97_3267 | algP | DR97_3267 | DR97_2623 | annotation not available | Alginate regulatory protein; The promoter for a critical alginate biosynthetic gene, AlgD, encoding GDP-mannose dehydrogenase, is activated only under conditions reminiscent of the cystic fibrosis lung (i.e. under high osmolarity), and at least two regulatory genes, AlgP and AlgQ, have been implicated in this activation process | 0.443 |
| DR97_3267 | pvdQ | DR97_3267 | DR97_6047 | annotation not available | Acyl-homoserine lactone acylase pvdq; Catalyzes the deacylation of acyl-homoserine lactone (AHL or acyl-HSL), releasing homoserine lactone (HSL) and the corresponding fatty acid. Possesses a specificity for the degradation of long-chain acyl-HSLs (side chains of 11 to 14 carbons in length). Degrades 3-oxo- C12-HSL, one of the two main AHL signal molecules of P.aeruginosa, and thereby functions as a quorum quencher, inhibiting the las quorum- sensing system. Therefore, may enable P.aeruginosa to modulate its own quorum-sensing-dependent pathogenic potential. Also appears to be required [...] | 0.434 |
| DR97_3269 | DR97_3267 | DR97_3269 | DR97_3267 | annotation not available | annotation not available | 0.592 |
| DR97_3821 | DR97_2880 | DR97_3821 | DR97_2880 | annotation not available | annotation not available | 0.683 |
| DR97_3821 | DR97_3267 | DR97_3821 | DR97_3267 | annotation not available | annotation not available | 0.408 |
| DR97_3821 | algP | DR97_3821 | DR97_2623 | annotation not available | Alginate regulatory protein; The promoter for a critical alginate biosynthetic gene, AlgD, encoding GDP-mannose dehydrogenase, is activated only under conditions reminiscent of the cystic fibrosis lung (i.e. under high osmolarity), and at least two regulatory genes, AlgP and AlgQ, have been implicated in this activation process | 0.702 |
| algP | DR97_2880 | DR97_2623 | DR97_2880 | Alginate regulatory protein; The promoter for a critical alginate biosynthetic gene, AlgD, encoding GDP-mannose dehydrogenase, is activated only under conditions reminiscent of the cystic fibrosis lung (i.e. under high osmolarity), and at least two regulatory genes, AlgP and AlgQ, have been implicated in this activation process | annotation not available | 0.547 |
| algP | DR97_3267 | DR97_2623 | DR97_3267 | Alginate regulatory protein; The promoter for a critical alginate biosynthetic gene, AlgD, encoding GDP-mannose dehydrogenase, is activated only under conditions reminiscent of the cystic fibrosis lung (i.e. under high osmolarity), and at least two regulatory genes, AlgP and AlgQ, have been implicated in this activation process | annotation not available | 0.443 |
| algP | DR97_3821 | DR97_2623 | DR97_3821 | Alginate regulatory protein; The promoter for a critical alginate biosynthetic gene, AlgD, encoding GDP-mannose dehydrogenase, is activated only under conditions reminiscent of the cystic fibrosis lung (i.e. under high osmolarity), and at least two regulatory genes, AlgP and AlgQ, have been implicated in this activation process | annotation not available | 0.702 |
| pvdQ | DR97_3267 | DR97_6047 | DR97_3267 | Acyl-homoserine lactone acylase pvdq; Catalyzes the deacylation of acyl-homoserine lactone (AHL or acyl-HSL), releasing homoserine lactone (HSL) and the corresponding fatty acid. Possesses a specificity for the degradation of long-chain acyl-HSLs (side chains of 11 to 14 carbons in length). Degrades 3-oxo- C12-HSL, one of the two main AHL signal molecules of P.aeruginosa, and thereby functions as a quorum quencher, inhibiting the las quorum- sensing system. Therefore, may enable P.aeruginosa to modulate its own quorum-sensing-dependent pathogenic potential. Also appears to be required [...] | annotation not available | 0.434 |
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