Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| DR97_3267 | DR97_3269 | DR97_3267 | DR97_3269 | annotation not available | annotation not available | 0.592 |
| DR97_3269 | DR97_3267 | DR97_3269 | DR97_3267 | annotation not available | annotation not available | 0.592 |
| DR97_3269 | DR97_3284 | DR97_3269 | DR97_3284 | annotation not available | annotation not available | 0.549 |
| DR97_3269 | DR97_5457 | DR97_3269 | DR97_5457 | annotation not available | annotation not available | 0.773 |
| DR97_3269 | YcaC | DR97_3269 | DR97_732 | annotation not available | Hypothetical protein; Nicotinamidase/pyrazinamidase | 0.559 |
| DR97_3269 | YeaM | DR97_3269 | DR97_705 | annotation not available | annotation not available | 0.571 |
| DR97_3269 | cdhR | DR97_3269 | DR97_2766 | annotation not available | Helix-turn-helix domain protein; Induces the transcription of the PA5384-PA5388 operon in response to carnitine. This operon is involved in the degradation of L- carnitine, and allows P.aeruginosa to grow on L-carnitine as the sole source of carbon and nitrogen | 0.521 |
| DR97_3269 | hfq | DR97_3269 | DR97_2297 | annotation not available | Host factor-i protein; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs | 0.488 |
| DR97_3269 | mmsR | DR97_3269 | DR97_4368 | annotation not available | Transcriptional regulator; Regulatory protein for the mmsAB operon. Activates the transcription of the mmsAB genes | 0.810 |
| DR97_3269 | phnF | DR97_3269 | DR97_4541 | annotation not available | Gntr family transcriptional regulator, phosphonate transport system regulatory protein; Transcriptional regulator; C_P_lyase_phnF: phosphonate metabolism transcriptional regulator PhnF | 0.489 |
| DR97_3269 | rpoS | DR97_3269 | DR97_4317 | annotation not available | Rna polymerase nonessential primary-like sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response | 0.718 |
| DR97_3284 | DR97_3269 | DR97_3284 | DR97_3269 | annotation not available | annotation not available | 0.549 |
| DR97_5457 | DR97_3269 | DR97_5457 | DR97_3269 | annotation not available | annotation not available | 0.773 |
| DR97_5457 | rpoS | DR97_5457 | DR97_4317 | annotation not available | Rna polymerase nonessential primary-like sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response | 0.557 |
| YcaC | DR97_3269 | DR97_732 | DR97_3269 | Hypothetical protein; Nicotinamidase/pyrazinamidase | annotation not available | 0.559 |
| YeaM | DR97_3269 | DR97_705 | DR97_3269 | annotation not available | annotation not available | 0.571 |
| YeaM | cdhR | DR97_705 | DR97_2766 | annotation not available | Helix-turn-helix domain protein; Induces the transcription of the PA5384-PA5388 operon in response to carnitine. This operon is involved in the degradation of L- carnitine, and allows P.aeruginosa to grow on L-carnitine as the sole source of carbon and nitrogen | 0.859 |
| YeaM | mmsR | DR97_705 | DR97_4368 | annotation not available | Transcriptional regulator; Regulatory protein for the mmsAB operon. Activates the transcription of the mmsAB genes | 0.887 |
| cdhR | DR97_3269 | DR97_2766 | DR97_3269 | Helix-turn-helix domain protein; Induces the transcription of the PA5384-PA5388 operon in response to carnitine. This operon is involved in the degradation of L- carnitine, and allows P.aeruginosa to grow on L-carnitine as the sole source of carbon and nitrogen | annotation not available | 0.521 |
| cdhR | YeaM | DR97_2766 | DR97_705 | Helix-turn-helix domain protein; Induces the transcription of the PA5384-PA5388 operon in response to carnitine. This operon is involved in the degradation of L- carnitine, and allows P.aeruginosa to grow on L-carnitine as the sole source of carbon and nitrogen | annotation not available | 0.859 |
page 1 of 2
STRING Database User Survey
