STRINGSTRING
gadX protein (Pseudomonas aeruginosa) - STRING interaction network
"gadX" - annotation not available in Pseudomonas aeruginosa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gadXannotation not available (350 aa)    
Predicted Functional Partners:
vqsM
annotation not available (342 aa)
    
          0.773
rpoS
rpoS_proteo- RNA polymerase sigma factor RpoS (334 aa)
        
 
  0.740
mmsR
annotation not available (307 aa)
 
 
 
  0.724
DR97_3267
annotation not available (795 aa)
              0.592
prlC
annotation not available (681 aa)
            
  0.553
ygiW
annotation not available (116 aa)
    
     
  0.522
mdtC
annotation not available (1036 aa)
        
 
  0.482
phnF
Transcriptional regulator; C_P_lyase_phnF- phosphonate metabolism transcriptional regulator PhnF (234 aa)
            
  0.463
DR97_1236
annotation not available (293 aa)
    
          0.457
DR97_1089
Uncharacterized protein (339 aa)
    
     
  0.456
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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