bbsF_1 protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

bbsF_1

annotation not available (407 aa)

Predicted Functional Partners:

Gcdh

0.888

gcvA_8

0.472

amaB

0.423

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Gcdh	bbsF_1	DR97_3413	DR97_3412	Glutaryl-CoA dehydrogenase, mitochondrial; acyl-CoA dehydrogenase, N-terminal domain protein	annotation not available	0.888
Gcdh	gcvA_8	DR97_3413	DR97_3414	Glutaryl-CoA dehydrogenase, mitochondrial; acyl-CoA dehydrogenase, N-terminal domain protein	annotation not available	0.734
amaB	bbsF_1	DR97_3411	DR97_3412	Allantoate amidohydrolase; Hydantase- amidase, hydantoinase/carbamoylase family protein	annotation not available	0.423
bbsF_1	Gcdh	DR97_3412	DR97_3413	annotation not available	Glutaryl-CoA dehydrogenase, mitochondrial; acyl-CoA dehydrogenase, N-terminal domain protein	0.888
bbsF_1	amaB	DR97_3412	DR97_3411	annotation not available	Allantoate amidohydrolase; Hydantase- amidase, hydantoinase/carbamoylase family protein	0.423
bbsF_1	gcvA_8	DR97_3412	DR97_3414	annotation not available	annotation not available	0.472
gcvA_8	Gcdh	DR97_3414	DR97_3413	annotation not available	Glutaryl-CoA dehydrogenase, mitochondrial; acyl-CoA dehydrogenase, N-terminal domain protein	0.734
gcvA_8	bbsF_1	DR97_3414	DR97_3412	annotation not available	annotation not available	0.472

Network

Neighborhood

Textmining

Cooccurrence

Experiments

Coexpression

Databases

Fusion

© STRING Consortium 2020

Credits

Access

Info

About