STRINGSTRING
nirN protein (Pseudomonas aeruginosa) - STRING interaction network
"nirN" - annotation not available in Pseudomonas aeruginosa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nirNannotation not available (493 aa)    
Predicted Functional Partners:
nirJ
rSAM_NirJ- heme d1 biosynthesis radical SAM protein NirJ (387 aa)
   
  0.999
nirL
annotation not available (174 aa)
 
   
  0.997
nirG
annotation not available (147 aa)
 
   
  0.994
nirH
annotation not available (171 aa)
 
   
  0.993
nirE
Methyltransferase; cobA_cysG_Cterm- uroporphyrinogen-III C-methyltransferase; Belongs to the precorrin methyltransferase family (279 aa)
   
   
  0.984
nirD1
annotation not available (150 aa)
 
   
  0.980
nirC
annotation not available (119 aa)
 
 
  0.980
nirM
annotation not available (104 aa)
 
   
  0.973
nirF
annotation not available (392 aa)
 
 
0.965
norB
annotation not available (465 aa)
 
 
  0.919
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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