Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
NirD | NirE | DR97_3483 | DR97_3478 | Asnc-type helix-turn-helix domain protein; Required for the biosynthesis of heme D1 of nitrite reductase | Putative uroporphyrin-iii c-methyltransferase; Belongs to the precorrin methyltransferase family | 0.936 |
NirD | nirC | DR97_3483 | DR97_3485 | Asnc-type helix-turn-helix domain protein; Required for the biosynthesis of heme D1 of nitrite reductase | Cytochrome c oxidase, cbb3-type, subunit iii family protein; Monoheme c-type cytochrome | 0.977 |
NirD | nirF | DR97_3483 | DR97_3484 | Asnc-type helix-turn-helix domain protein; Required for the biosynthesis of heme D1 of nitrite reductase | Lactonase, 7-bladed beta-propeller family protein; Required for the biosynthesis of heme d1 of nitrite reductase. Could have a dehydrogenase activity yielding sirohydrochlorin from precorrin-2 or dehydrogenation of propionate side chain C17 | 0.989 |
NirD | nirG | DR97_3483 | DR97_3481 | Asnc-type helix-turn-helix domain protein; Required for the biosynthesis of heme D1 of nitrite reductase | annotation not available | 0.949 |
NirD | nirH | DR97_3483 | DR97_3480 | Asnc-type helix-turn-helix domain protein; Required for the biosynthesis of heme D1 of nitrite reductase | annotation not available | 0.994 |
NirD | nirJ | DR97_3483 | DR97_3479 | Asnc-type helix-turn-helix domain protein; Required for the biosynthesis of heme D1 of nitrite reductase | rSAM_NirJ: heme d1 biosynthesis radical SAM protein NirJ | 0.988 |
NirD | nirL | DR97_3483 | DR97_3482 | Asnc-type helix-turn-helix domain protein; Required for the biosynthesis of heme D1 of nitrite reductase | annotation not available | 0.996 |
NirD | nirM | DR97_3483 | DR97_3486 | Asnc-type helix-turn-helix domain protein; Required for the biosynthesis of heme D1 of nitrite reductase | Cytochrome c-551 precursor; Electron donor for cytochrome cd1 in nitrite and nitrate respiration | 0.870 |
NirD | nirN | DR97_3483 | DR97_3477 | Asnc-type helix-turn-helix domain protein; Required for the biosynthesis of heme D1 of nitrite reductase | annotation not available | 0.979 |
NirE | NirD | DR97_3478 | DR97_3483 | Putative uroporphyrin-iii c-methyltransferase; Belongs to the precorrin methyltransferase family | Asnc-type helix-turn-helix domain protein; Required for the biosynthesis of heme D1 of nitrite reductase | 0.936 |
NirE | nirC | DR97_3478 | DR97_3485 | Putative uroporphyrin-iii c-methyltransferase; Belongs to the precorrin methyltransferase family | Cytochrome c oxidase, cbb3-type, subunit iii family protein; Monoheme c-type cytochrome | 0.861 |
NirE | nirF | DR97_3478 | DR97_3484 | Putative uroporphyrin-iii c-methyltransferase; Belongs to the precorrin methyltransferase family | Lactonase, 7-bladed beta-propeller family protein; Required for the biosynthesis of heme d1 of nitrite reductase. Could have a dehydrogenase activity yielding sirohydrochlorin from precorrin-2 or dehydrogenation of propionate side chain C17 | 0.987 |
NirE | nirG | DR97_3478 | DR97_3481 | Putative uroporphyrin-iii c-methyltransferase; Belongs to the precorrin methyltransferase family | annotation not available | 0.991 |
NirE | nirH | DR97_3478 | DR97_3480 | Putative uroporphyrin-iii c-methyltransferase; Belongs to the precorrin methyltransferase family | annotation not available | 0.983 |
NirE | nirJ | DR97_3478 | DR97_3479 | Putative uroporphyrin-iii c-methyltransferase; Belongs to the precorrin methyltransferase family | rSAM_NirJ: heme d1 biosynthesis radical SAM protein NirJ | 0.993 |
NirE | nirL | DR97_3478 | DR97_3482 | Putative uroporphyrin-iii c-methyltransferase; Belongs to the precorrin methyltransferase family | annotation not available | 0.991 |
NirE | nirM | DR97_3478 | DR97_3486 | Putative uroporphyrin-iii c-methyltransferase; Belongs to the precorrin methyltransferase family | Cytochrome c-551 precursor; Electron donor for cytochrome cd1 in nitrite and nitrate respiration | 0.885 |
NirE | nirN | DR97_3478 | DR97_3477 | Putative uroporphyrin-iii c-methyltransferase; Belongs to the precorrin methyltransferase family | annotation not available | 0.989 |
nirC | NirD | DR97_3485 | DR97_3483 | Cytochrome c oxidase, cbb3-type, subunit iii family protein; Monoheme c-type cytochrome | Asnc-type helix-turn-helix domain protein; Required for the biosynthesis of heme D1 of nitrite reductase | 0.977 |
nirC | NirE | DR97_3485 | DR97_3478 | Cytochrome c oxidase, cbb3-type, subunit iii family protein; Monoheme c-type cytochrome | Putative uroporphyrin-iii c-methyltransferase; Belongs to the precorrin methyltransferase family | 0.861 |
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