DR97_3500 protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DR97_3500

annotation not available (238 aa)

Predicted Functional Partners:

argD2

0.933

guaB

0.923

DR97_3497

0.858

DR97_3498

0.845

purL

0.681

cynR_9

0.621

DR97_4677

0.573

msrB

0.554

DR97_3367

0.551

opuCA

0.527

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_3367	DR97_3500	DR97_3367	DR97_3500	annotation not available	annotation not available	0.551
DR97_3367	guaB	DR97_3367	DR97_4100	annotation not available	Inosine-5’-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5’-phosphate (IMP) to xanthosine 5’-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth; Belongs to the IMPDH/GMPR family	0.602
DR97_3367	purL	DR97_3367	DR97_4112	annotation not available	Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate	0.666
DR97_3497	DR97_3498	DR97_3497	DR97_3498	annotation not available	Uncharacterized protein	0.849
DR97_3497	DR97_3500	DR97_3497	DR97_3500	annotation not available	annotation not available	0.858
DR97_3497	argD2	DR97_3497	DR97_3499	annotation not available	annotation not available	0.858
DR97_3497	cynR_9	DR97_3497	DR97_3496	annotation not available	annotation not available	0.611
DR97_3498	DR97_3497	DR97_3498	DR97_3497	Uncharacterized protein	annotation not available	0.849
DR97_3498	DR97_3500	DR97_3498	DR97_3500	Uncharacterized protein	annotation not available	0.845
DR97_3498	argD2	DR97_3498	DR97_3499	Uncharacterized protein	annotation not available	0.845
DR97_3498	cynR_9	DR97_3498	DR97_3496	Uncharacterized protein	annotation not available	0.596
DR97_3500	DR97_3367	DR97_3500	DR97_3367	annotation not available	annotation not available	0.551
DR97_3500	DR97_3497	DR97_3500	DR97_3497	annotation not available	annotation not available	0.858
DR97_3500	DR97_3498	DR97_3500	DR97_3498	annotation not available	Uncharacterized protein	0.845
DR97_3500	DR97_4677	DR97_3500	DR97_4677	annotation not available	Putative EAL domain/GGDEF domain-containing protein; GGDEF- diguanylate cyclase domain protein	0.573
DR97_3500	argD2	DR97_3500	DR97_3499	annotation not available	annotation not available	0.933
DR97_3500	cynR_9	DR97_3500	DR97_3496	annotation not available	annotation not available	0.621
DR97_3500	guaB	DR97_3500	DR97_4100	annotation not available	Inosine-5’-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5’-phosphate (IMP) to xanthosine 5’-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth; Belongs to the IMPDH/GMPR family	0.923
DR97_3500	msrB	DR97_3500	DR97_5114	annotation not available	annotation not available	0.554
DR97_3500	opuCA	DR97_3500	DR97_3976	annotation not available	Glycine betaine/carnitine/choline transport ATP-binding protein OpuCA; proV- glycine betaine/L-proline transport ATP binding subunit	0.527

page 1 of 3

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2019

Credits

Access

Info

About