puuB_9 protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

puuB_9

annotation not available (429 aa)

Predicted Functional Partners:

puuR_5

0.929

BDS1

0.854

hpxO_4

0.769

spuB

0.758

puuA_3

0.740

DR97_369

0.732

puuA

0.727

DR97_5807

0.727

puuA_4

0.671

phzS

0.650

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BDS1	puuB_9	DR97_1244	DR97_3503	annotation not available	annotation not available	0.854
DR97_369	DR97_5807	DR97_369	DR97_5807	annotation not available	annotation not available	0.629
DR97_369	puuA	DR97_369	DR97_3258	annotation not available	annotation not available	0.627
DR97_369	puuA_3	DR97_369	DR97_2901	annotation not available	annotation not available	0.605
DR97_369	puuA_4	DR97_369	DR97_4571	annotation not available	annotation not available	0.677
DR97_369	puuB_9	DR97_369	DR97_3503	annotation not available	annotation not available	0.732
DR97_369	spuB	DR97_369	DR97_3260	annotation not available	annotation not available	0.658
DR97_5807	DR97_369	DR97_5807	DR97_369	annotation not available	annotation not available	0.629
DR97_5807	puuA	DR97_5807	DR97_3258	annotation not available	annotation not available	0.659
DR97_5807	puuA_3	DR97_5807	DR97_2901	annotation not available	annotation not available	0.627
DR97_5807	puuA_4	DR97_5807	DR97_4571	annotation not available	annotation not available	0.680
DR97_5807	puuB_9	DR97_5807	DR97_3503	annotation not available	annotation not available	0.727
DR97_5807	spuB	DR97_5807	DR97_3260	annotation not available	annotation not available	0.670
hpxO_4	phzS	DR97_4599	DR97_3694	annotation not available	annotation not available	0.495
hpxO_4	puuB_9	DR97_4599	DR97_3503	annotation not available	annotation not available	0.769
phzS	hpxO_4	DR97_3694	DR97_4599	annotation not available	annotation not available	0.495
phzS	puuB_9	DR97_3694	DR97_3503	annotation not available	annotation not available	0.650
puuA	DR97_369	DR97_3258	DR97_369	annotation not available	annotation not available	0.627
puuA	DR97_5807	DR97_3258	DR97_5807	annotation not available	annotation not available	0.659
puuA	puuA_3	DR97_3258	DR97_2901	annotation not available	annotation not available	0.626

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