STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YqjCHypothetical protein; Uncharacterized protein (139 aa)    
Predicted Functional Partners:
DR97_4896
Hypothetical protein; DUF883 domain-containing protein
 
  
 0.916
YgaU
Hypothetical protein; LysM domain/BON superfamily protein
  
    0.660
osmE
annotation not available
  
    0.654
wrbA
Nad(p)h dehydrogenase (quinone); Belongs to the WrbA family
   
    0.648
PrkA
prkA serine kinase C-terminal domain protein
   
    0.640
PsiF
annotation not available
  
    0.560
cupA3
Outer membrane usher protein; Usher CupA3; papC N-terminal domain protein
 
     0.559
cupA5
Hypothetical protein; Pili assembly chaperone PapD, C-terminal domain protein
  
     0.541
cupA2
Fimbrial chaperone protein; Pili assembly chaperone PapD, C-terminal domain protein
  
     0.531
cupB3
Outer membrane usher protein; papC N-terminal domain protein
 
     0.527
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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