ygbM_1 protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
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Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

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textmining

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protein homology

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Score

ygbM_1

annotation not available (265 aa)

Predicted Functional Partners:

gcl

0.692

glxR

0.575

epd

0.533

pgk

0.522

eta

0.439

DR97_4615

0.411

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_4615	ygbM_1	DR97_4615	DR97_3518	annotation not available	annotation not available	0.411
epd	pgk	DR97_3520	DR97_3521	D-erythrose-4-phosphate dehydrogenase; Catalyzes the NAD-dependent conversion of D-erythrose 4- phosphate to 4-phosphoerythronate	annotation not available	0.994
epd	ygbM_1	DR97_3520	DR97_3518	D-erythrose-4-phosphate dehydrogenase; Catalyzes the NAD-dependent conversion of D-erythrose 4- phosphate to 4-phosphoerythronate	annotation not available	0.533
eta	ygbM_1	DR97_786	DR97_3518	annotation not available	annotation not available	0.439
gcl	glxR	DR97_520	DR97_522	Glyox_carbo_lig: glyoxylate carboligase; Belongs to the TPP enzyme family	Tartro_sem_red: 2-hydroxy-3-oxopropionate reductase	0.982
gcl	ygbM_1	DR97_520	DR97_3518	Glyox_carbo_lig: glyoxylate carboligase; Belongs to the TPP enzyme family	annotation not available	0.692
glxR	gcl	DR97_522	DR97_520	Tartro_sem_red: 2-hydroxy-3-oxopropionate reductase	Glyox_carbo_lig: glyoxylate carboligase; Belongs to the TPP enzyme family	0.982
glxR	ygbM_1	DR97_522	DR97_3518	Tartro_sem_red: 2-hydroxy-3-oxopropionate reductase	annotation not available	0.575
pgk	epd	DR97_3521	DR97_3520	annotation not available	D-erythrose-4-phosphate dehydrogenase; Catalyzes the NAD-dependent conversion of D-erythrose 4- phosphate to 4-phosphoerythronate	0.994
pgk	ygbM_1	DR97_3521	DR97_3518	annotation not available	annotation not available	0.522
ygbM_1	DR97_4615	DR97_3518	DR97_4615	annotation not available	annotation not available	0.411
ygbM_1	epd	DR97_3518	DR97_3520	annotation not available	D-erythrose-4-phosphate dehydrogenase; Catalyzes the NAD-dependent conversion of D-erythrose 4- phosphate to 4-phosphoerythronate	0.533
ygbM_1	eta	DR97_3518	DR97_786	annotation not available	annotation not available	0.439
ygbM_1	gcl	DR97_3518	DR97_520	annotation not available	Glyox_carbo_lig: glyoxylate carboligase; Belongs to the TPP enzyme family	0.692
ygbM_1	glxR	DR97_3518	DR97_522	annotation not available	Tartro_sem_red: 2-hydroxy-3-oxopropionate reductase	0.575
ygbM_1	pgk	DR97_3518	DR97_3521	annotation not available	annotation not available	0.522

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