DR97_3538 protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

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[Homology]

Score

DR97_3538

Uncharacterized protein (115 aa)

Predicted Functional Partners:

DR97_3539

0.845

DR97_3537

0.826

DR97_3536

0.797

DR97_3540

0.476

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

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... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
DR97_3536	DR97_3537	Uncharacterized protein	Uncharacterized protein	0.816
DR97_3536	DR97_3538	Uncharacterized protein	Uncharacterized protein	0.797
DR97_3536	DR97_3539	Uncharacterized protein	Uncharacterized protein	0.797
DR97_3536	DR97_3540	Uncharacterized protein	annotation not available	0.453
DR97_3537	DR97_3536	Uncharacterized protein	Uncharacterized protein	0.816
DR97_3537	DR97_3538	Uncharacterized protein	Uncharacterized protein	0.826
DR97_3537	DR97_3539	Uncharacterized protein	Uncharacterized protein	0.826
DR97_3537	DR97_3540	Uncharacterized protein	annotation not available	0.466
DR97_3538	DR97_3536	Uncharacterized protein	Uncharacterized protein	0.797
DR97_3538	DR97_3537	Uncharacterized protein	Uncharacterized protein	0.826
DR97_3538	DR97_3539	Uncharacterized protein	Uncharacterized protein	0.845
DR97_3538	DR97_3540	Uncharacterized protein	annotation not available	0.476
DR97_3539	DR97_3536	Uncharacterized protein	Uncharacterized protein	0.797
DR97_3539	DR97_3537	Uncharacterized protein	Uncharacterized protein	0.826
DR97_3539	DR97_3538	Uncharacterized protein	Uncharacterized protein	0.845
DR97_3539	DR97_3540	Uncharacterized protein	annotation not available	0.476
DR97_3540	DR97_3536	annotation not available	Uncharacterized protein	0.453
DR97_3540	DR97_3537	annotation not available	Uncharacterized protein	0.466
DR97_3540	DR97_3538	annotation not available	Uncharacterized protein	0.476
DR97_3540	DR97_3539	annotation not available	Uncharacterized protein	0.476

Network

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Experiments

Cooccurrence

Databases

Fusion

Textmining

Coexpression

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