STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ptrBUncharacterized protein; C4_traR_proteo: phage/conjugal plasmid C-4 type zinc finger , TraR family protein (66 aa)    
Predicted Functional Partners:
DR97_3583
Hypothetical protein; Uncharacterized protein
  
    0.738
prtN
Pyocin activator prtn family protein; Activates pyocin genes, probably by binding to the sequences conserved in their 5' non-coding regions (P box)
  
    0.624
DR97_3585
Hypothetical protein; Uncharacterized protein
  
    0.593
ci
Transcriptional regulator; Represses the promoter activity of the prtN gene
 
  
 0.550
DR97_3595
annotation not available
 
    0.527
DR97_1033
Hypothetical protein; Uncharacterized protein
   
    0.525
DR97_3581
annotation not available
       0.524
DR97_3594
annotation not available
  
    0.522
DR97_3800
annotation not available
  
     0.512
GpU
annotation not available
  
    0.500
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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