STRINGSTRING
yijF protein (Pseudomonas aeruginosa) - STRING interaction network
"yijF" - DUF1287 domain-containing protein in Pseudomonas aeruginosa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yijFDUF1287 domain-containing protein (198 aa)    
Predicted Functional Partners:
DR97_363
annotation not available (381 aa)
   
        0.878
ppkB
annotation not available (555 aa)
           
  0.554
DR97_4679
Quinone_pig3- NAD(P)H quinone oxidoreductase, PIG3 family protein (320 aa)
           
  0.551
opmB
Uncharacterized protein; outer_NodT- efflux transporter, outer membrane factor (OMF) lipo, NodT family protein (492 aa)
           
  0.550
DR97_364
Uncharacterized protein (59 aa)
              0.515
DR97_516
annotation not available (109 aa)
   
          0.449
ynbC
annotation not available (586 aa)
 
          0.442
creA
annotation not available (154 aa)
           
  0.440
opgH
Glucans biosynthesis glucosyltransferase H; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs) (861 aa)
           
  0.435
DR97_5632
annotation not available (449 aa)
 
          0.432
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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