rpmC protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

rpmC

L29- ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family (63 aa)

Predicted Functional Partners:

rplW

0.999

rplX

0.999

rplP

0.999

rpsQ

0.999

rpsC

0.999

rplV

0.999

rpsS

0.999

rplD

0.999

rplB

0.999

rplN

0.998

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplB	rplD	DR97_3651	DR97_3649	rplB_bact- ribosomal protein L2	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel	0.999
rplB	rplN	DR97_3651	DR97_3658	rplB_bact- ribosomal protein L2	50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome	0.999
rplB	rplP	DR97_3651	DR97_3655	rplB_bact- ribosomal protein L2	50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs	0.999
rplB	rplV	DR97_3651	DR97_3653	rplB_bact- ribosomal protein L2	50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	0.999
rplB	rplW	DR97_3651	DR97_3650	rplB_bact- ribosomal protein L2	50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome	0.999
rplB	rplX	DR97_3651	DR97_3659	rplB_bact- ribosomal protein L2	50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit	0.999
rplB	rpmC	DR97_3651	DR97_3656	rplB_bact- ribosomal protein L2	L29- ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family	0.999
rplB	rpsC	DR97_3651	DR97_3654	rplB_bact- ribosomal protein L2	rpsC_bact- ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family	0.999
rplB	rpsQ	DR97_3651	DR97_3657	rplB_bact- ribosomal protein L2	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5’-end of 16S ribosomal RNA	0.999
rplB	rpsS	DR97_3651	DR97_3652	rplB_bact- ribosomal protein L2	30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA	0.999
rplD	rplB	DR97_3649	DR97_3651	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel	rplB_bact- ribosomal protein L2	0.999
rplD	rplN	DR97_3649	DR97_3658	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel	50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome	0.999
rplD	rplP	DR97_3649	DR97_3655	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel	50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs	0.999
rplD	rplV	DR97_3649	DR97_3653	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel	50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	0.999
rplD	rplW	DR97_3649	DR97_3650	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel	50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome	0.999
rplD	rplX	DR97_3649	DR97_3659	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel	50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit	0.999
rplD	rpmC	DR97_3649	DR97_3656	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel	L29- ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family	0.999
rplD	rpsC	DR97_3649	DR97_3654	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel	rpsC_bact- ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family	0.999
rplD	rpsQ	DR97_3649	DR97_3657	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5’-end of 16S ribosomal RNA	0.999
rplD	rpsS	DR97_3649	DR97_3652	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel	30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA	0.999

page 1 of 6

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About