Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
PchH | pchA | DR97_3688 | DR97_3680 | annotation not available | Salicylate biosynthesis isochorismate synthase; Involved in the conversion of chorismate to salicylate | 0.676 |
PchH | pchB | DR97_3688 | DR97_3681 | annotation not available | Salicylate biosynthesis protein pchb; Involved in the incorporation of salicylate into the siderophore pyochelin. Catalyzes the elimination of the enolpyruvyl side chain from isochorismate to yield salicylate and pyruvate via a rare pericyclic hydrogen transfer mechanism from C2 to C5. PchB also catalyzes the nonphysiological Claisen rearrangement of chorismate to prephenate in which the pyruvylenol tail is transferred from a C3 ether linkage to a C1-C9 linkage | 0.942 |
PchH | pchD | DR97_3688 | DR97_3683 | annotation not available | annotation not available | 0.937 |
PchH | pchE | DR97_3688 | DR97_3685 | annotation not available | Dihydroaeruginoic acid synthetase; AA-adenyl-dom: amino acid adenylation domain protein | 0.991 |
PchH | pchF | DR97_3688 | DR97_3686 | annotation not available | Pyochelin synthetase; AA-adenyl-dom: amino acid adenylation domain protein | 0.992 |
PchH | pchG | DR97_3688 | DR97_3687 | annotation not available | Pyochelin biosynthetic protein PchG; Thiaz-red: thiazolinyl imide reductase family protein | 0.996 |
PchH | pchR | DR97_3688 | DR97_3684 | annotation not available | Arac family transcriptional regulator, transcriptional activator of the genes for pyochelin and ferripyochelin receptors; Positive activator of the genes for pyochelin and ferripyochelin receptors | 0.799 |
PchH | rifR | DR97_3688 | DR97_3682 | annotation not available | annotation not available | 0.933 |
aroQ2 | pchA | DR97_3202 | DR97_3680 | 3-dehydroquinate dehydratase, type II; Catalyzes a trans-dehydration via an enolate intermediate | Salicylate biosynthesis isochorismate synthase; Involved in the conversion of chorismate to salicylate | 0.835 |
aroQ2 | pchB | DR97_3202 | DR97_3681 | 3-dehydroquinate dehydratase, type II; Catalyzes a trans-dehydration via an enolate intermediate | Salicylate biosynthesis protein pchb; Involved in the incorporation of salicylate into the siderophore pyochelin. Catalyzes the elimination of the enolpyruvyl side chain from isochorismate to yield salicylate and pyruvate via a rare pericyclic hydrogen transfer mechanism from C2 to C5. PchB also catalyzes the nonphysiological Claisen rearrangement of chorismate to prephenate in which the pyruvylenol tail is transferred from a C3 ether linkage to a C1-C9 linkage | 0.873 |
aroQ2 | pheA | DR97_3202 | DR97_4770 | 3-dehydroquinate dehydratase, type II; Catalyzes a trans-dehydration via an enolate intermediate | Chorismate mutase / prephenate dehydratase; Catalyzes the Claisen rearrangement of chorismate to prephenate and the decarboxylation/dehydration of prephenate to phenylpyruvate | 0.782 |
pchA | PchH | DR97_3680 | DR97_3688 | Salicylate biosynthesis isochorismate synthase; Involved in the conversion of chorismate to salicylate | annotation not available | 0.676 |
pchA | aroQ2 | DR97_3680 | DR97_3202 | Salicylate biosynthesis isochorismate synthase; Involved in the conversion of chorismate to salicylate | 3-dehydroquinate dehydratase, type II; Catalyzes a trans-dehydration via an enolate intermediate | 0.835 |
pchA | pchB | DR97_3680 | DR97_3681 | Salicylate biosynthesis isochorismate synthase; Involved in the conversion of chorismate to salicylate | Salicylate biosynthesis protein pchb; Involved in the incorporation of salicylate into the siderophore pyochelin. Catalyzes the elimination of the enolpyruvyl side chain from isochorismate to yield salicylate and pyruvate via a rare pericyclic hydrogen transfer mechanism from C2 to C5. PchB also catalyzes the nonphysiological Claisen rearrangement of chorismate to prephenate in which the pyruvylenol tail is transferred from a C3 ether linkage to a C1-C9 linkage | 0.997 |
pchA | pchD | DR97_3680 | DR97_3683 | Salicylate biosynthesis isochorismate synthase; Involved in the conversion of chorismate to salicylate | annotation not available | 0.999 |
pchA | pchE | DR97_3680 | DR97_3685 | Salicylate biosynthesis isochorismate synthase; Involved in the conversion of chorismate to salicylate | Dihydroaeruginoic acid synthetase; AA-adenyl-dom: amino acid adenylation domain protein | 0.869 |
pchA | pchF | DR97_3680 | DR97_3686 | Salicylate biosynthesis isochorismate synthase; Involved in the conversion of chorismate to salicylate | Pyochelin synthetase; AA-adenyl-dom: amino acid adenylation domain protein | 0.941 |
pchA | pchG | DR97_3680 | DR97_3687 | Salicylate biosynthesis isochorismate synthase; Involved in the conversion of chorismate to salicylate | Pyochelin biosynthetic protein PchG; Thiaz-red: thiazolinyl imide reductase family protein | 0.756 |
pchA | pchR | DR97_3680 | DR97_3684 | Salicylate biosynthesis isochorismate synthase; Involved in the conversion of chorismate to salicylate | Arac family transcriptional regulator, transcriptional activator of the genes for pyochelin and ferripyochelin receptors; Positive activator of the genes for pyochelin and ferripyochelin receptors | 0.682 |
pchA | pheA | DR97_3680 | DR97_4770 | Salicylate biosynthesis isochorismate synthase; Involved in the conversion of chorismate to salicylate | Chorismate mutase / prephenate dehydratase; Catalyzes the Claisen rearrangement of chorismate to prephenate and the decarboxylation/dehydration of prephenate to phenylpyruvate | 0.923 |
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