Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DR97_3693 | PchH | DR97_3693 | DR97_3688 | Mfs transporter, pat family, beta-lactamase induction signal transducer ampg; Transporter; sider_RhtX_FptX: siderophore transporter, RhtX/FptX family protein | annotation not available | 0.837 |
DR97_3693 | PchI | DR97_3693 | DR97_3689 | Mfs transporter, pat family, beta-lactamase induction signal transducer ampg; Transporter; sider_RhtX_FptX: siderophore transporter, RhtX/FptX family protein | annotation not available | 0.845 |
DR97_3693 | fptA | DR97_3693 | DR97_3690 | Mfs transporter, pat family, beta-lactamase induction signal transducer ampg; Transporter; sider_RhtX_FptX: siderophore transporter, RhtX/FptX family protein | Outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid; High-affinity outer membrane receptor required for the transport of Fe(3+)-pyochelin | 0.926 |
DR97_3693 | fptB | DR97_3693 | DR97_3691 | Mfs transporter, pat family, beta-lactamase induction signal transducer ampg; Transporter; sider_RhtX_FptX: siderophore transporter, RhtX/FptX family protein | Putative membrane protein; May play some role in transport of Fe(3+)-pyochelin | 0.923 |
DR97_3693 | pchB | DR97_3693 | DR97_3681 | Mfs transporter, pat family, beta-lactamase induction signal transducer ampg; Transporter; sider_RhtX_FptX: siderophore transporter, RhtX/FptX family protein | Salicylate biosynthesis protein pchb; Involved in the incorporation of salicylate into the siderophore pyochelin. Catalyzes the elimination of the enolpyruvyl side chain from isochorismate to yield salicylate and pyruvate via a rare pericyclic hydrogen transfer mechanism from C2 to C5. PchB also catalyzes the nonphysiological Claisen rearrangement of chorismate to prephenate in which the pyruvylenol tail is transferred from a C3 ether linkage to a C1-C9 linkage | 0.695 |
DR97_3693 | pchD | DR97_3693 | DR97_3683 | Mfs transporter, pat family, beta-lactamase induction signal transducer ampg; Transporter; sider_RhtX_FptX: siderophore transporter, RhtX/FptX family protein | annotation not available | 0.577 |
DR97_3693 | pchE | DR97_3693 | DR97_3685 | Mfs transporter, pat family, beta-lactamase induction signal transducer ampg; Transporter; sider_RhtX_FptX: siderophore transporter, RhtX/FptX family protein | Dihydroaeruginoic acid synthetase; AA-adenyl-dom: amino acid adenylation domain protein | 0.830 |
DR97_3693 | pchF | DR97_3693 | DR97_3686 | Mfs transporter, pat family, beta-lactamase induction signal transducer ampg; Transporter; sider_RhtX_FptX: siderophore transporter, RhtX/FptX family protein | Pyochelin synthetase; AA-adenyl-dom: amino acid adenylation domain protein | 0.833 |
DR97_3693 | pchG | DR97_3693 | DR97_3687 | Mfs transporter, pat family, beta-lactamase induction signal transducer ampg; Transporter; sider_RhtX_FptX: siderophore transporter, RhtX/FptX family protein | Pyochelin biosynthetic protein PchG; Thiaz-red: thiazolinyl imide reductase family protein | 0.839 |
DR97_3693 | rifR | DR97_3693 | DR97_3682 | Mfs transporter, pat family, beta-lactamase induction signal transducer ampg; Transporter; sider_RhtX_FptX: siderophore transporter, RhtX/FptX family protein | annotation not available | 0.555 |
PchH | DR97_3693 | DR97_3688 | DR97_3693 | annotation not available | Mfs transporter, pat family, beta-lactamase induction signal transducer ampg; Transporter; sider_RhtX_FptX: siderophore transporter, RhtX/FptX family protein | 0.837 |
PchH | PchI | DR97_3688 | DR97_3689 | annotation not available | annotation not available | 0.964 |
PchH | fptA | DR97_3688 | DR97_3690 | annotation not available | Outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid; High-affinity outer membrane receptor required for the transport of Fe(3+)-pyochelin | 0.953 |
PchH | fptB | DR97_3688 | DR97_3691 | annotation not available | Putative membrane protein; May play some role in transport of Fe(3+)-pyochelin | 0.708 |
PchH | pchB | DR97_3688 | DR97_3681 | annotation not available | Salicylate biosynthesis protein pchb; Involved in the incorporation of salicylate into the siderophore pyochelin. Catalyzes the elimination of the enolpyruvyl side chain from isochorismate to yield salicylate and pyruvate via a rare pericyclic hydrogen transfer mechanism from C2 to C5. PchB also catalyzes the nonphysiological Claisen rearrangement of chorismate to prephenate in which the pyruvylenol tail is transferred from a C3 ether linkage to a C1-C9 linkage | 0.942 |
PchH | pchD | DR97_3688 | DR97_3683 | annotation not available | annotation not available | 0.937 |
PchH | pchE | DR97_3688 | DR97_3685 | annotation not available | Dihydroaeruginoic acid synthetase; AA-adenyl-dom: amino acid adenylation domain protein | 0.991 |
PchH | pchF | DR97_3688 | DR97_3686 | annotation not available | Pyochelin synthetase; AA-adenyl-dom: amino acid adenylation domain protein | 0.992 |
PchH | pchG | DR97_3688 | DR97_3687 | annotation not available | Pyochelin biosynthetic protein PchG; Thiaz-red: thiazolinyl imide reductase family protein | 0.996 |
PchH | rifR | DR97_3688 | DR97_3682 | annotation not available | annotation not available | 0.933 |
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