The upcoming version of STRING is available for preview: it includes new data, new enrichment categories (e.g. diseases and tissues) and covers 14000 fully sequenced genomes.
STRING allows inspection of the interaction evidence for any given network. Choose any of the viewers above (disabled if not applicable in your network).
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
Node Content
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DR97_370
annotation not available (436 aa)
Predicted Functional Partners:
DR97_369
annotation not available
0.934
spuB
annotation not available
0.771
puuA_3
annotation not available
0.760
DR97_5807
annotation not available
0.741
puuA
annotation not available
0.740
puuA_4
annotation not available
0.697
spuA
annotation not available
0.629
DR97_3178
annotation not available
0.613
GABA-TP1
annotation not available
0.575
soxA
soxA: sarcosine oxidase, alpha subunit; Belongs to the GcvT family
STRING Data Update
