Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ApaH | DR97_707 | DR97_5941 | DR97_707 | annotation not available | annotation not available | 0.671 |
ApaH | neo | DR97_5941 | DR97_3752 | annotation not available | Aminoglycoside 3'-phosphotransferase type iib; Belongs to the aminoglycoside phosphotransferase family | 0.428 |
ApaH | str | DR97_5941 | DR97_18 | annotation not available | annotation not available | 0.466 |
DR97_3270 | neo | DR97_3270 | DR97_3752 | annotation not available | Aminoglycoside 3'-phosphotransferase type iib; Belongs to the aminoglycoside phosphotransferase family | 0.694 |
DR97_3751 | neo | DR97_3751 | DR97_3752 | annotation not available | Aminoglycoside 3'-phosphotransferase type iib; Belongs to the aminoglycoside phosphotransferase family | 0.545 |
DR97_707 | ApaH | DR97_707 | DR97_5941 | annotation not available | annotation not available | 0.671 |
DR97_707 | neo | DR97_707 | DR97_3752 | annotation not available | Aminoglycoside 3'-phosphotransferase type iib; Belongs to the aminoglycoside phosphotransferase family | 0.627 |
DR97_707 | str | DR97_707 | DR97_18 | annotation not available | annotation not available | 0.503 |
TetV | arr | DR97_5258 | DR97_5125 | annotation not available | annotation not available | 0.731 |
TetV | neo | DR97_5258 | DR97_3752 | annotation not available | Aminoglycoside 3'-phosphotransferase type iib; Belongs to the aminoglycoside phosphotransferase family | 0.673 |
aphB | neo | DR97_3285 | DR97_3752 | Histone deacetylase domain protein; Catalyzes the deacetylation of acetylated polyamines such as N-acetylputrescine and N-acetylcadaverine. Plays an important role in the metabolism of acetylated polyamines in P.aeruginosa. Is involved in the degradation pathways of N-acetylputrescine and N-acetylcadaverine, that allow P.aeruginosa to utilize these acetylpolyamines as a carbon source under glucose starvation. Shows nearly no activity against N(1)- acetylspermine and N(1)-acetylspermidine. Can also hydrolyze artificial trifluoroacetylated lysine-derivative, and to a lesser extent, acety [...] | Aminoglycoside 3'-phosphotransferase type iib; Belongs to the aminoglycoside phosphotransferase family | 0.578 |
arr | TetV | DR97_5125 | DR97_5258 | annotation not available | annotation not available | 0.731 |
arr | neo | DR97_5125 | DR97_3752 | annotation not available | Aminoglycoside 3'-phosphotransferase type iib; Belongs to the aminoglycoside phosphotransferase family | 0.483 |
mexD | neo | DR97_1904 | DR97_3752 | 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 family protein | Aminoglycoside 3'-phosphotransferase type iib; Belongs to the aminoglycoside phosphotransferase family | 0.485 |
neo | ApaH | DR97_3752 | DR97_5941 | Aminoglycoside 3'-phosphotransferase type iib; Belongs to the aminoglycoside phosphotransferase family | annotation not available | 0.428 |
neo | DR97_3270 | DR97_3752 | DR97_3270 | Aminoglycoside 3'-phosphotransferase type iib; Belongs to the aminoglycoside phosphotransferase family | annotation not available | 0.694 |
neo | DR97_3751 | DR97_3752 | DR97_3751 | Aminoglycoside 3'-phosphotransferase type iib; Belongs to the aminoglycoside phosphotransferase family | annotation not available | 0.545 |
neo | DR97_707 | DR97_3752 | DR97_707 | Aminoglycoside 3'-phosphotransferase type iib; Belongs to the aminoglycoside phosphotransferase family | annotation not available | 0.627 |
neo | TetV | DR97_3752 | DR97_5258 | Aminoglycoside 3'-phosphotransferase type iib; Belongs to the aminoglycoside phosphotransferase family | annotation not available | 0.673 |
neo | aphB | DR97_3752 | DR97_3285 | Aminoglycoside 3'-phosphotransferase type iib; Belongs to the aminoglycoside phosphotransferase family | Histone deacetylase domain protein; Catalyzes the deacetylation of acetylated polyamines such as N-acetylputrescine and N-acetylcadaverine. Plays an important role in the metabolism of acetylated polyamines in P.aeruginosa. Is involved in the degradation pathways of N-acetylputrescine and N-acetylcadaverine, that allow P.aeruginosa to utilize these acetylpolyamines as a carbon source under glucose starvation. Shows nearly no activity against N(1)- acetylspermine and N(1)-acetylspermidine. Can also hydrolyze artificial trifluoroacetylated lysine-derivative, and to a lesser extent, acety [...] | 0.578 |
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