Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DR97_3798 | DR97_3799 | DR97_3798 | DR97_3799 | Rmld substrate binding domain protein; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose | annotation not available | 0.921 |
DR97_3798 | galU | DR97_3798 | DR97_5824 | Rmld substrate binding domain protein; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose | UTP--glucose-1-phosphate uridylyltransferase; May play a role in stationary phase survival | 0.488 |
DR97_3798 | rfbC | DR97_3798 | DR97_2532 | Rmld substrate binding domain protein; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose | DTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose | 0.996 |
DR97_3798 | udg | DR97_3798 | DR97_5825 | Rmld substrate binding domain protein; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose | UDP-glucose 6-dehydrogenase; NDP-sugDHase: nucleotide sugar dehydrogenase family protein; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family | 0.444 |
DR97_3799 | DR97_3798 | DR97_3799 | DR97_3798 | annotation not available | Rmld substrate binding domain protein; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose | 0.921 |
DR97_3799 | DR97_3852 | DR97_3799 | DR97_3852 | annotation not available | annotation not available | 0.857 |
DR97_3799 | DR97_4383 | DR97_3799 | DR97_4383 | annotation not available | UDP-glucose 6-dehydrogenase; NDP-sugDHase: nucleotide sugar dehydrogenase family protein; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family | 0.948 |
DR97_3799 | algG | DR97_3799 | DR97_4397 | annotation not available | Poly(beta-d-mannuronate) c5 epimerase; Catalyzes the epimerization of beta-D-mannuronate to alpha-L- guluronate during the synthesis of the linear polysaccharide alginate . In addition, is part of a periplasmic protein complex that protects alginate from degradation by AlgL by channeling the newly formed alginate polymer through a scaffold that transfers the alginate polymer through the periplasmic space to the outer membrane secretin AlgE | 0.854 |
DR97_3799 | algL | DR97_3799 | DR97_4395 | annotation not available | Poly(beta-d-mannuronate) lyase; Catalyzes the depolymerization of alginate by cleaving the beta-1,4 glycosidic bond between two adjacent sugar residues via a beta-elimination mechanism May serve to degrade mislocalized alginate that is trapped in the periplasmic space. Acts preferentially on non-acetylated alginate or its precursor mannuronan. Is able to catalyze cleavage adjacent to either mannuronate or guluronate residues in alginate. Exhaustive digestion of alginate by AlgL generates dimeric and trimeric products . In addition to its enzymatic function, AlgL appears to be required [...] | 0.848 |
DR97_3799 | fadH1 | DR97_3799 | DR97_4844 | annotation not available | 2,4-dienoyl-CoA reductase [NADPH]; NADH:flavin oxidoreductase / NADH oxidase family protein | 0.854 |
DR97_3799 | fadH2 | DR97_3799 | DR97_2162 | annotation not available | 2,4-dienoyl-CoA reductase [NADPH]; NADH:flavin oxidoreductase / NADH oxidase family protein | 0.854 |
DR97_3799 | galU | DR97_3799 | DR97_5824 | annotation not available | UTP--glucose-1-phosphate uridylyltransferase; May play a role in stationary phase survival | 0.939 |
DR97_3799 | rfbC | DR97_3799 | DR97_2532 | annotation not available | DTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose | 0.897 |
DR97_3799 | udg | DR97_3799 | DR97_5825 | annotation not available | UDP-glucose 6-dehydrogenase; NDP-sugDHase: nucleotide sugar dehydrogenase family protein; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family | 0.946 |
DR97_3852 | DR97_3799 | DR97_3852 | DR97_3799 | annotation not available | annotation not available | 0.857 |
DR97_4383 | DR97_3799 | DR97_4383 | DR97_3799 | UDP-glucose 6-dehydrogenase; NDP-sugDHase: nucleotide sugar dehydrogenase family protein; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family | annotation not available | 0.948 |
DR97_4383 | galU | DR97_4383 | DR97_5824 | UDP-glucose 6-dehydrogenase; NDP-sugDHase: nucleotide sugar dehydrogenase family protein; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family | UTP--glucose-1-phosphate uridylyltransferase; May play a role in stationary phase survival | 0.940 |
DR97_4383 | rfbC | DR97_4383 | DR97_2532 | UDP-glucose 6-dehydrogenase; NDP-sugDHase: nucleotide sugar dehydrogenase family protein; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family | DTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose | 0.711 |
DR97_4383 | udg | DR97_4383 | DR97_5825 | UDP-glucose 6-dehydrogenase; NDP-sugDHase: nucleotide sugar dehydrogenase family protein; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family | UDP-glucose 6-dehydrogenase; NDP-sugDHase: nucleotide sugar dehydrogenase family protein; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family | 0.808 |
algG | DR97_3799 | DR97_4397 | DR97_3799 | Poly(beta-d-mannuronate) c5 epimerase; Catalyzes the epimerization of beta-D-mannuronate to alpha-L- guluronate during the synthesis of the linear polysaccharide alginate . In addition, is part of a periplasmic protein complex that protects alginate from degradation by AlgL by channeling the newly formed alginate polymer through a scaffold that transfers the alginate polymer through the periplasmic space to the outer membrane secretin AlgE | annotation not available | 0.854 |
page 1 of 2