Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
OprB | OprQ | DR97_6142 | DR97_5193 | annotation not available | annotation not available | 0.877 |
OprB | oprC | DR97_6142 | DR97_4079 | annotation not available | Iron complex outermembrane recepter protein; Putative copper transport outer membrane porin OprC; tonB-copper: TonB-dependent copper receptor | 0.877 |
OprB | oprE | DR97_6142 | DR97_3253 | annotation not available | annotation not available | 0.637 |
OprB | oprF | DR97_6142 | DR97_109 | annotation not available | Major porin and structural outer membrane porin; Has porin activity, forming small water-filled channels. Also has a structural role in determining cell shape and ability to grow in low-osmolarity medium | 0.743 |
OprB | oprG | DR97_6142 | DR97_3801 | annotation not available | annotation not available | 0.676 |
OprB | oprH | DR97_6142 | DR97_756 | annotation not available | PhoP/Q and low Mg2+ inducible outer membrane protein H1; OMP85_target: outer membrane insertion C-terminal signal domain protein | 0.510 |
OprQ | OprB | DR97_5193 | DR97_6142 | annotation not available | annotation not available | 0.877 |
OprQ | oprB | DR97_5193 | DR97_4750 | annotation not available | Glucose/carbohydrate outer membrane porin; Substrate-selective channel for a variety of different sugars. Could potentially facilitate the diffusion of diverse compounds, dependent on the presence of a hydroxyl group, but is presumably restricted to carbohydrates. Involved in the transport of glucose, mannitol, fructose and glycerol (sugars able to support the growth of P.aeruginosa). Facilitates glucose diffusion across the outer membrane | 0.876 |
OprQ | oprC | DR97_5193 | DR97_4079 | annotation not available | Iron complex outermembrane recepter protein; Putative copper transport outer membrane porin OprC; tonB-copper: TonB-dependent copper receptor | 0.737 |
OprQ | oprE | DR97_5193 | DR97_3253 | annotation not available | annotation not available | 0.416 |
OprQ | oprF | DR97_5193 | DR97_109 | annotation not available | Major porin and structural outer membrane porin; Has porin activity, forming small water-filled channels. Also has a structural role in determining cell shape and ability to grow in low-osmolarity medium | 0.850 |
OprQ | oprG | DR97_5193 | DR97_3801 | annotation not available | annotation not available | 0.850 |
OprQ | oprH | DR97_5193 | DR97_756 | annotation not available | PhoP/Q and low Mg2+ inducible outer membrane protein H1; OMP85_target: outer membrane insertion C-terminal signal domain protein | 0.571 |
OprQ | pal | DR97_5193 | DR97_964 | annotation not available | Peptidoglycan associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity | 0.485 |
hemN | oprG | DR97_390 | DR97_3801 | Oxygen-independent coproporphyrinogen iii oxidase; Involved in the heme biosynthesis. Catalyzes the anaerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen III to yield the vinyl groups in protoporphyrinogen IX | annotation not available | 0.763 |
icmP | oprG | DR97_1547 | DR97_3801 | annotation not available | annotation not available | 0.671 |
icmP | pal | DR97_1547 | DR97_964 | annotation not available | Peptidoglycan associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity | 0.490 |
oprB | OprQ | DR97_4750 | DR97_5193 | Glucose/carbohydrate outer membrane porin; Substrate-selective channel for a variety of different sugars. Could potentially facilitate the diffusion of diverse compounds, dependent on the presence of a hydroxyl group, but is presumably restricted to carbohydrates. Involved in the transport of glucose, mannitol, fructose and glycerol (sugars able to support the growth of P.aeruginosa). Facilitates glucose diffusion across the outer membrane | annotation not available | 0.876 |
oprB | oprC | DR97_4750 | DR97_4079 | Glucose/carbohydrate outer membrane porin; Substrate-selective channel for a variety of different sugars. Could potentially facilitate the diffusion of diverse compounds, dependent on the presence of a hydroxyl group, but is presumably restricted to carbohydrates. Involved in the transport of glucose, mannitol, fructose and glycerol (sugars able to support the growth of P.aeruginosa). Facilitates glucose diffusion across the outer membrane | Iron complex outermembrane recepter protein; Putative copper transport outer membrane porin OprC; tonB-copper: TonB-dependent copper receptor | 0.876 |
oprB | oprE | DR97_4750 | DR97_3253 | Glucose/carbohydrate outer membrane porin; Substrate-selective channel for a variety of different sugars. Could potentially facilitate the diffusion of diverse compounds, dependent on the presence of a hydroxyl group, but is presumably restricted to carbohydrates. Involved in the transport of glucose, mannitol, fructose and glycerol (sugars able to support the growth of P.aeruginosa). Facilitates glucose diffusion across the outer membrane | annotation not available | 0.583 |
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