DR97_3803 protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

DR97_3803

annotation not available (421 aa)

Predicted Functional Partners:

DR97_3804

0.995

DR97_3802

0.983

DR97_3805

0.954

DR97_2800

0.808

argA

0.699

oprG

0.618

macB

0.597

lolD

0.578

DR97_3030

0.575

macB1

0.575

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_2800	DR97_3803	DR97_2800	DR97_3803	Uncharacterized protein	annotation not available	0.808
DR97_2800	DR97_3804	DR97_2800	DR97_3804	Uncharacterized protein	annotation not available	0.777
DR97_2800	DR97_3805	DR97_2800	DR97_3805	Uncharacterized protein	Zinc-binding protein	0.823
DR97_3030	DR97_3803	DR97_3030	DR97_3803	annotation not available	annotation not available	0.575
DR97_3030	macB	DR97_3030	DR97_6042	annotation not available	Macrolide export ATP-binding/permease protein MacB; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides	0.580
DR97_3802	DR97_3803	DR97_3802	DR97_3803	Uncharacterized protein	annotation not available	0.983
DR97_3802	DR97_3804	DR97_3802	DR97_3804	Uncharacterized protein	annotation not available	0.972
DR97_3802	DR97_3805	DR97_3802	DR97_3805	Uncharacterized protein	Zinc-binding protein	0.927
DR97_3802	oprG	DR97_3802	DR97_3801	Uncharacterized protein	annotation not available	0.545
DR97_3803	DR97_2800	DR97_3803	DR97_2800	annotation not available	Uncharacterized protein	0.808
DR97_3803	DR97_3030	DR97_3803	DR97_3030	annotation not available	annotation not available	0.575
DR97_3803	DR97_3802	DR97_3803	DR97_3802	annotation not available	Uncharacterized protein	0.983
DR97_3803	DR97_3804	DR97_3803	DR97_3804	annotation not available	annotation not available	0.995
DR97_3803	DR97_3805	DR97_3803	DR97_3805	annotation not available	Zinc-binding protein	0.954
DR97_3803	argA	DR97_3803	DR97_2573	annotation not available	N-Ac-Glu-synth- amino-acid N-acetyltransferase	0.699
DR97_3803	lolD	DR97_3803	DR97_4952	annotation not available	Lipoprotein-releasing system ATP-binding protein LolD; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner	0.578
DR97_3803	macB	DR97_3803	DR97_6042	annotation not available	Macrolide export ATP-binding/permease protein MacB; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides	0.597
DR97_3803	macB1	DR97_3803	DR97_1899	annotation not available	annotation not available	0.575
DR97_3803	oprG	DR97_3803	DR97_3801	annotation not available	annotation not available	0.618
DR97_3804	DR97_2800	DR97_3804	DR97_2800	annotation not available	Uncharacterized protein	0.777

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