DR97_3829 protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

DR97_3829

annotation not available (244 aa)

Predicted Functional Partners:

DR97_3828

0.978

DR97_3830

0.974

DR97_3827

0.952

DR97_4207

0.910

DR97_4205

0.842

DR97_4208

0.675

nosR

0.436

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

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structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_3827	DR97_3828	DR97_3827	DR97_3828	Uncharacterized protein	Putative ABC transporter protein	0.962
DR97_3827	DR97_3829	DR97_3827	DR97_3829	Uncharacterized protein	annotation not available	0.952
DR97_3827	DR97_3830	DR97_3827	DR97_3830	Uncharacterized protein	annotation not available	0.933
DR97_3827	DR97_4205	DR97_3827	DR97_4205	Uncharacterized protein	annotation not available	0.631
DR97_3827	DR97_4207	DR97_3827	DR97_4207	Uncharacterized protein	Uncharacterized protein	0.774
DR97_3828	DR97_3827	DR97_3828	DR97_3827	Putative ABC transporter protein	Uncharacterized protein	0.962
DR97_3828	DR97_3829	DR97_3828	DR97_3829	Putative ABC transporter protein	annotation not available	0.978
DR97_3828	DR97_3830	DR97_3828	DR97_3830	Putative ABC transporter protein	annotation not available	0.968
DR97_3828	DR97_4205	DR97_3828	DR97_4205	Putative ABC transporter protein	annotation not available	0.813
DR97_3828	DR97_4208	DR97_3828	DR97_4208	Putative ABC transporter protein	Uncharacterized protein	0.760
DR97_3829	DR97_3827	DR97_3829	DR97_3827	annotation not available	Uncharacterized protein	0.952
DR97_3829	DR97_3828	DR97_3829	DR97_3828	annotation not available	Putative ABC transporter protein	0.978
DR97_3829	DR97_3830	DR97_3829	DR97_3830	annotation not available	annotation not available	0.974
DR97_3829	DR97_4205	DR97_3829	DR97_4205	annotation not available	annotation not available	0.842
DR97_3829	DR97_4207	DR97_3829	DR97_4207	annotation not available	Uncharacterized protein	0.910
DR97_3829	DR97_4208	DR97_3829	DR97_4208	annotation not available	Uncharacterized protein	0.675
DR97_3829	nosR	DR97_3829	DR97_4531	annotation not available	annotation not available	0.436
DR97_3830	DR97_3827	DR97_3830	DR97_3827	annotation not available	Uncharacterized protein	0.933
DR97_3830	DR97_3828	DR97_3830	DR97_3828	annotation not available	Putative ABC transporter protein	0.968
DR97_3830	DR97_3829	DR97_3830	DR97_3829	annotation not available	annotation not available	0.974

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