STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccoP1Cbb3-type putative cytochrome c oxidase subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex (318 aa)    
Predicted Functional Partners:
ccoN1
Cytochrome c oxidase, cbb3-type, subunit i; Belongs to the heme-copper respiratory oxidase family
 
 
 0.998
ccoO1
ccoO: cytochrome c oxidase, cbb3-type, subunit II
 
  
 0.997
ccoN2
Cbb3-type putative cytochrome oxidase subunit; Belongs to the heme-copper respiratory oxidase family
 
 
 0.989
ccoO2
ccoO: cytochrome c oxidase, cbb3-type, subunit II
 
  
 0.986
CcoN-2
ccoN: cytochrome c oxidase, cbb3-type, subunit I
 
 
 0.983
ccoS
ccoS: cytochrome oxidase maturation protein, cbb3-type
 
   
 0.977
ccoQ1
annotation not available
 
 
 0.943
ccoG
ccoG_rdxA_fixG: cytochrome c oxidase accessory protein CcoG
 
  
 0.918
ccoP2
Cbb3-type putative cytochrome c oxidase subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex
 
  
0.873
hemN
Oxygen-independent coproporphyrinogen iii oxidase; Involved in the heme biosynthesis. Catalyzes the anaerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen III to yield the vinyl groups in protoporphyrinogen IX
 
   
 0.858
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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