STRINGSTRING
hrpB protein (Pseudomonas aeruginosa) - STRING interaction network
"hrpB" - DEAH_box_HrpB: ATP-dependent helicase HrpB in Pseudomonas aeruginosa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hrpBDEAH_box_HrpB- ATP-dependent helicase HrpB (838 aa)    
Predicted Functional Partners:
DR97_3916
ATP-dependent RNA helicase rhlE; Helicase conserved C-terminal domain protein; Belongs to the DEAD box helicase family (449 aa)
   
 
  0.684
fieF
Cation-efflux pump FieF; CDF- cation diffusion facilitator transporter family protein; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family (298 aa)
   
      0.661
DR97_5670
annotation not available (446 aa)
   
 
  0.640
DR97_3904
annotation not available (138 aa)
              0.580
DR97_1137
annotation not available (1130 aa)
   
 
  0.579
DR97_5232
annotation not available (2098 aa)
   
 
  0.576
rhlB
ATP-dependent RNA helicase RhlB; DEAD-box RNA helicase involved in RNA degradation. Has RNA-dependent ATPase activity and unwinds double-stranded RNA; Belongs to the DEAD box helicase family. RhlB subfamily (507 aa)
   
 
  0.557
DR97_3396
ATP-dependent RNA helicase RhlE; DEAD-box RNA helicase involved in ribosome assembly. Has RNA-dependent ATPase activity and unwinds double-stranded RNA (639 aa)
   
 
  0.550
nadA
Quinolinate synthase A; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate; Belongs to the quinolinate synthase A family. Type 1 subfamily (352 aa)
           
  0.545
srmB
ATP-dependent RNA helicase; Helicase conserved C-terminal domain protein; Belongs to the DEAD box helicase family (441 aa)
   
 
  0.543
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
Server load: low (16%) [HD]