STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hupABelongs to the bacterial histone-like protein family. (93 aa)    
Predicted Functional Partners:
DR97_5682
annotation not available
      
 0.570
Fis
Belongs to the transcriptional regulatory Fis family.
    
 
 0.552
polA
In addition to polymerase activity, this DNA polymerase exhibits 3'-5' and 5'-3' exonuclease activity
   
 
 0.486
ansA
annotation not available
      
 0.485
rmf
During stationary phase, converts 70S ribosomes to an inactive dimeric form (100S ribosomes)
      
 0.483
cspD
cspD: cold shock domain protein CspD
    
 
 0.430
aroA
annotation not available
     
 0.427
trkH
Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA
  
   
 0.421
pheT
Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily
 
 
 0.421
rlmH
Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
  
     0.412
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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