STRINGSTRING
ybdL protein (Pseudomonas aeruginosa) - STRING interaction network
"ybdL" - annotation not available in Pseudomonas aeruginosa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybdLannotation not available (382 aa)    
Predicted Functional Partners:
yafV
annotation not available (264 aa)
   
  0.931
yjaB_2
annotation not available (143 aa)
           
  0.853
DR97_606
annotation not available (533 aa)
   
   
  0.769
gltB
annotation not available (1481 aa)
   
 
  0.760
DR97_5812
annotation not available (552 aa)
   
   
  0.742
potF7
annotation not available (367 aa)
         
  0.713
metF
Fadh2- 5,10-methylenetetrahydrofolate reductase (282 aa)
   
   
  0.672
artJ
annotation not available (250 aa)
     
   
  0.641
kynU
Kynureninase- kynureninase (416 aa)
     
 
  0.638
phhC
annotation not available (399 aa)
     
 
  0.636
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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