ybdL protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

ybdL

annotation not available (382 aa)

Predicted Functional Partners:

yafV

0.931

yjaB_2

0.853

DR97_606

0.769

gltB

0.760

DR97_5812

0.742

potF7

0.713

metF

0.672

artJ

0.641

kynU

0.638

phhC

0.636

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_5812	DR97_606	DR97_5812	DR97_606	annotation not available	annotation not available	0.841
DR97_5812	artJ	DR97_5812	DR97_2520	annotation not available	annotation not available	0.475
DR97_5812	gltB	DR97_5812	DR97_2391	annotation not available	annotation not available	0.682
DR97_5812	metF	DR97_5812	DR97_3398	annotation not available	Fadh2- 5,10-methylenetetrahydrofolate reductase	0.491
DR97_5812	potF7	DR97_5812	DR97_5453	annotation not available	annotation not available	0.459
DR97_5812	ybdL	DR97_5812	DR97_4071	annotation not available	annotation not available	0.742
DR97_5812	yjaB_2	DR97_5812	DR97_595	annotation not available	annotation not available	0.756
DR97_606	DR97_5812	DR97_606	DR97_5812	annotation not available	annotation not available	0.841
DR97_606	artJ	DR97_606	DR97_2520	annotation not available	annotation not available	0.459
DR97_606	gltB	DR97_606	DR97_2391	annotation not available	annotation not available	0.682
DR97_606	metF	DR97_606	DR97_3398	annotation not available	Fadh2- 5,10-methylenetetrahydrofolate reductase	0.423
DR97_606	potF7	DR97_606	DR97_5453	annotation not available	annotation not available	0.459
DR97_606	ybdL	DR97_606	DR97_4071	annotation not available	annotation not available	0.769
DR97_606	yjaB_2	DR97_606	DR97_595	annotation not available	annotation not available	0.756
artJ	DR97_5812	DR97_2520	DR97_5812	annotation not available	annotation not available	0.475
artJ	DR97_606	DR97_2520	DR97_606	annotation not available	annotation not available	0.459
artJ	metF	DR97_2520	DR97_3398	annotation not available	Fadh2- 5,10-methylenetetrahydrofolate reductase	0.411
artJ	potF7	DR97_2520	DR97_5453	annotation not available	annotation not available	0.447
artJ	ybdL	DR97_2520	DR97_4071	annotation not available	annotation not available	0.641
artJ	yjaB_2	DR97_2520	DR97_595	annotation not available	annotation not available	0.720

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