STRINGSTRING
rsmJ protein (Pseudomonas aeruginosa) - STRING interaction network
"rsmJ" - Ribosomal RNA small subunit methyltransferase J in Pseudomonas aeruginosa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rsmJRibosomal RNA small subunit methyltransferase J; Specifically methylates the guanosine in position 1516 of 16S rRNA (261 aa)    
Predicted Functional Partners:
prlC
annotation not available (681 aa)
   
  0.898
DR97_4198
annotation not available (425 aa)
   
        0.770
DR97_4195
annotation not available (274 aa)
   
        0.706
DR97_4196
annotation not available (230 aa)
              0.672
yeaZ
tRNA (Adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB; T6A_YeaZ- tRNA threonylcarbamoyl adenosine modification protein YeaZ (226 aa)
   
        0.576
DR97_4955
Putative competence protein; comEC_Rec2- DNA internalization-related competence protein ComEC/Rec2 (741 aa)
 
          0.530
DR97_4194
Uncharacterized protein (288 aa)
              0.530
adk
Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family (215 aa)
   
        0.516
yafE
annotation not available (253 aa)
   
   
  0.486
rlmA
annotation not available (267 aa)
   
   
  0.482
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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