STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DR97_4214annotation not available (367 aa)    
Predicted Functional Partners:
DR97_4213
Transcriptional regulator, spx/mgsr family protein; Belongs to the ArsC family
     
 0.643
DR97_4212
annotation not available
       0.630
DR97_955
annotation not available
  
     0.577
dapD
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Catalyzes the conversion of the cyclic tetrahydrodipicolinate (THDP) into the acyclic N-succinyl-L-2-amino-6-oxopimelate using succinyl-CoA (By similarity). Displays succinyl transferase activity with L-2-aminopimelate and succinyl-CoA as substrates
  
    0.573
cupC3
Outer membrane usher protein; Usher CupC3; papC N-terminal domain protein
  
   
 0.559
cupB4
Chaperone protein EcpD; Pili assembly chaperone PapD, C-terminal domain protein
  
     0.534
imm
annotation not available
  
     0.526
imm1
pyocin-S1 immunity protein; Belongs to the colicins ColE2/ColE8/ColE9 and pyocins S1/S2 family
  
     0.521
DR97_3467
Hypothetical protein; Pili assembly chaperone PapD, C-terminal domain protein
  
     0.512
cupC2
Hypothetical protein; Chaperone protein EcpD; Pili assembly chaperone PapD, C-terminal domain protein
  
     0.506
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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