ykgO protein (Pseudomonas aeruginosa) - STRING interaction network

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Score

ykgO

rpmJ_bact- ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family (50 aa)

Predicted Functional Partners:

rpmE2

0.997

rpsN

0.980

rpsH

0.954

rpmG

0.952

rpsK

0.952

rpsM

0.951

rpsE

0.950

rplF

0.949

rplO

0.948

rpmC

0.946

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

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... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplF	rplO	DR97_3663	DR97_3667	50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center	50S ribosomal protein L15; Binds to the 23S rRNA	0.999
rplF	rpmC	DR97_3663	DR97_3656	50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center	L29- ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family	0.997
rplF	rpmE2	DR97_3663	DR97_4338	50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center	L31- ribosomal protein L31	0.843
rplF	rpmG	DR97_3663	DR97_2686	50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center	rpmG_bact- ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family	0.914
rplF	rpsE	DR97_3663	DR97_3665	50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center	30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; Belongs to the universal ribosomal protein uS5 family	0.999
rplF	rpsH	DR97_3663	DR97_3662	50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center	30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit	0.999
rplF	rpsK	DR97_3663	DR97_3671	50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center	30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome	0.999
rplF	rpsM	DR97_3663	DR97_3670	50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center	30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P- sites	0.999
rplF	rpsN	DR97_3663	DR97_3661	50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center	30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site	0.999
rplF	ykgO	DR97_3663	DR97_4339	50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center	rpmJ_bact- ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family	0.949
rplO	rplF	DR97_3667	DR97_3663	50S ribosomal protein L15; Binds to the 23S rRNA	50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center	0.999
rplO	rpmC	DR97_3667	DR97_3656	50S ribosomal protein L15; Binds to the 23S rRNA	L29- ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family	0.995
rplO	rpmE2	DR97_3667	DR97_4338	50S ribosomal protein L15; Binds to the 23S rRNA	L31- ribosomal protein L31	0.758
rplO	rpmG	DR97_3667	DR97_2686	50S ribosomal protein L15; Binds to the 23S rRNA	rpmG_bact- ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family	0.912
rplO	rpsE	DR97_3667	DR97_3665	50S ribosomal protein L15; Binds to the 23S rRNA	30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; Belongs to the universal ribosomal protein uS5 family	0.999
rplO	rpsH	DR97_3667	DR97_3662	50S ribosomal protein L15; Binds to the 23S rRNA	30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit	0.999
rplO	rpsK	DR97_3667	DR97_3671	50S ribosomal protein L15; Binds to the 23S rRNA	30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome	0.999
rplO	rpsM	DR97_3667	DR97_3670	50S ribosomal protein L15; Binds to the 23S rRNA	30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P- sites	0.999
rplO	rpsN	DR97_3667	DR97_3661	50S ribosomal protein L15; Binds to the 23S rRNA	30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site	0.999
rplO	ykgO	DR97_3667	DR97_4339	50S ribosomal protein L15; Binds to the 23S rRNA	rpmJ_bact- ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family	0.948

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