STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LipGannotation not available (328 aa)    
Predicted Functional Partners:
DR97_6117
annotation not available
   
 
 0.855
DR97_3942
annotation not available
 
 
 0.647
DR97_1102
annotation not available
   
   0.632
DR97_5140
Hypothetical protein; Uncharacterized protein
  
   0.618
rpsI
Small subunit ribosomal protein s9; Belongs to the universal ribosomal protein uS9 family
   
 
  0.615
phaC1
PHA_synth_II: poly(R)-hydroxyalkanoic acid synthase, class II family protein
  
    0.607
rpsP
Small subunit ribosomal protein s16; Belongs to the bacterial ribosomal protein bS16 family
  
 
  0.601
metR
Lysr family transcriptional regulator, regulator for mete and meth; Belongs to the LysR transcriptional regulatory family
       0.587
DR97_4801
annotation not available
 
 
 0.587
DR97_1526
annotation not available
   
    0.571
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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