glpR protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

glpR

annotation not available (251 aa)

Predicted Functional Partners:

glpK1

0.887

glpD

0.854

fruA

0.739

purR

0.711

glpF

0.700

glpK2

0.690

fruR

0.680

fruI

0.662

gntR

0.637

DR97_535

0.609

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_535	fruA	DR97_535	DR97_4382	Glycerol kinase; FGGY family of carbohydrate kinase, N-terminal domain protein; Belongs to the FGGY kinase family	FRU- PTS system, Fru family, IIB component domain protein	0.495
DR97_535	fruI	DR97_535	DR97_4380	Glycerol kinase; FGGY family of carbohydrate kinase, N-terminal domain protein; Belongs to the FGGY kinase family	Phosphotransferase system transporter enzyme I, FruI; PTS_I_fam- phosphoenolpyruvate-protein phosphotransferase; Belongs to the PEP-utilizing enzyme family	0.581
DR97_535	glpD	DR97_535	DR97_4355	Glycerol kinase; FGGY family of carbohydrate kinase, N-terminal domain protein; Belongs to the FGGY kinase family	annotation not available	0.971
DR97_535	glpF	DR97_535	DR97_4358	Glycerol kinase; FGGY family of carbohydrate kinase, N-terminal domain protein; Belongs to the FGGY kinase family	Glycerol uptake facilitator protein; MIP- MIP channel s family protein; Belongs to the MIP/aquaporin (TC 1.A.8) family	0.976
DR97_535	glpK1	DR97_535	DR97_4357	Glycerol kinase; FGGY family of carbohydrate kinase, N-terminal domain protein; Belongs to the FGGY kinase family	Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family	0.829
DR97_535	glpK2	DR97_535	DR97_4360	Glycerol kinase; FGGY family of carbohydrate kinase, N-terminal domain protein; Belongs to the FGGY kinase family	Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family	0.828
DR97_535	glpR	DR97_535	DR97_4356	Glycerol kinase; FGGY family of carbohydrate kinase, N-terminal domain protein; Belongs to the FGGY kinase family	annotation not available	0.609
fruA	DR97_535	DR97_4382	DR97_535	FRU- PTS system, Fru family, IIB component domain protein	Glycerol kinase; FGGY family of carbohydrate kinase, N-terminal domain protein; Belongs to the FGGY kinase family	0.495
fruA	fruI	DR97_4382	DR97_4380	FRU- PTS system, Fru family, IIB component domain protein	Phosphotransferase system transporter enzyme I, FruI; PTS_I_fam- phosphoenolpyruvate-protein phosphotransferase; Belongs to the PEP-utilizing enzyme family	0.999
fruA	fruR	DR97_4382	DR97_4379	FRU- PTS system, Fru family, IIB component domain protein	annotation not available	0.886
fruA	glpD	DR97_4382	DR97_4355	FRU- PTS system, Fru family, IIB component domain protein	annotation not available	0.613
fruA	glpF	DR97_4382	DR97_4358	FRU- PTS system, Fru family, IIB component domain protein	Glycerol uptake facilitator protein; MIP- MIP channel s family protein; Belongs to the MIP/aquaporin (TC 1.A.8) family	0.596
fruA	glpK1	DR97_4382	DR97_4357	FRU- PTS system, Fru family, IIB component domain protein	Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family	0.495
fruA	glpK2	DR97_4382	DR97_4360	FRU- PTS system, Fru family, IIB component domain protein	Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family	0.494
fruA	glpR	DR97_4382	DR97_4356	FRU- PTS system, Fru family, IIB component domain protein	annotation not available	0.739
fruA	gntR	DR97_4382	DR97_6113	FRU- PTS system, Fru family, IIB component domain protein	annotation not available	0.470
fruA	purR	DR97_4382	DR97_5899	FRU- PTS system, Fru family, IIB component domain protein	annotation not available	0.494
fruI	DR97_535	DR97_4380	DR97_535	Phosphotransferase system transporter enzyme I, FruI; PTS_I_fam- phosphoenolpyruvate-protein phosphotransferase; Belongs to the PEP-utilizing enzyme family	Glycerol kinase; FGGY family of carbohydrate kinase, N-terminal domain protein; Belongs to the FGGY kinase family	0.581
fruI	fruA	DR97_4380	DR97_4382	Phosphotransferase system transporter enzyme I, FruI; PTS_I_fam- phosphoenolpyruvate-protein phosphotransferase; Belongs to the PEP-utilizing enzyme family	FRU- PTS system, Fru family, IIB component domain protein	0.999
fruI	fruR	DR97_4380	DR97_4379	Phosphotransferase system transporter enzyme I, FruI; PTS_I_fam- phosphoenolpyruvate-protein phosphotransferase; Belongs to the PEP-utilizing enzyme family	annotation not available	0.984

page 1 of 4

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About