Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| crc | nth | DR97_2703 | DR97_4429 | Catabolite repression control protein; Xth: exodeoxyribonuclease III family protein | Endonuclease iii; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate | 0.912 |
| crc | xth | DR97_2703 | DR97_5626 | Catabolite repression control protein; Xth: exodeoxyribonuclease III family protein | exoDNase_III: exodeoxyribonuclease III | 0.818 |
| mutM | nth | DR97_3323 | DR97_4429 | Formamidopyrimidine-dna glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates | Endonuclease iii; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate | 0.953 |
| mutM | uvrA | DR97_3323 | DR97_3677 | Formamidopyrimidine-dna glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates | Excinuclease abc subunit a; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate | 0.842 |
| mutM | xth | DR97_3323 | DR97_5626 | Formamidopyrimidine-dna glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates | exoDNase_III: exodeoxyribonuclease III | 0.793 |
| nth | crc | DR97_4429 | DR97_2703 | Endonuclease iii; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate | Catabolite repression control protein; Xth: exodeoxyribonuclease III family protein | 0.912 |
| nth | mutM | DR97_4429 | DR97_3323 | Endonuclease iii; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate | Formamidopyrimidine-dna glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates | 0.953 |
| nth | rnfA | DR97_4429 | DR97_4435 | Endonuclease iii; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate | Na+-translocating ferredoxin:nad+ oxidoreductase subunit a; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane | 0.919 |
| nth | rnfB | DR97_4429 | DR97_4434 | Endonuclease iii; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate | Na+-translocating ferredoxin:nad+ oxidoreductase subunit b; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane | 0.973 |
| nth | rnfC | DR97_4429 | DR97_4433 | Endonuclease iii; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate | Na+-translocating ferredoxin:nad+ oxidoreductase subunit c; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane | 0.908 |
| nth | rnfD | DR97_4429 | DR97_4432 | Endonuclease iii; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate | Na+-translocating ferredoxin:nad+ oxidoreductase subunit d; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane | 0.921 |
| nth | rnfE | DR97_4429 | DR97_4430 | Endonuclease iii; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate | Na+-translocating ferredoxin:nad+ oxidoreductase subunit e; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane | 0.969 |
| nth | rnfG | DR97_4429 | DR97_4431 | Endonuclease iii; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate | Na+-translocating ferredoxin:nad+ oxidoreductase subunit g; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane | 0.923 |
| nth | uvrA | DR97_4429 | DR97_3677 | Endonuclease iii; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate | Excinuclease abc subunit a; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate | 0.841 |
| nth | xth | DR97_4429 | DR97_5626 | Endonuclease iii; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate | exoDNase_III: exodeoxyribonuclease III | 0.977 |
| rnfA | nth | DR97_4435 | DR97_4429 | Na+-translocating ferredoxin:nad+ oxidoreductase subunit a; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane | Endonuclease iii; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate | 0.919 |
| rnfA | rnfB | DR97_4435 | DR97_4434 | Na+-translocating ferredoxin:nad+ oxidoreductase subunit a; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane | Na+-translocating ferredoxin:nad+ oxidoreductase subunit b; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane | 0.999 |
| rnfA | rnfC | DR97_4435 | DR97_4433 | Na+-translocating ferredoxin:nad+ oxidoreductase subunit a; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane | Na+-translocating ferredoxin:nad+ oxidoreductase subunit c; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane | 0.998 |
| rnfA | rnfD | DR97_4435 | DR97_4432 | Na+-translocating ferredoxin:nad+ oxidoreductase subunit a; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane | Na+-translocating ferredoxin:nad+ oxidoreductase subunit d; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane | 0.998 |
| rnfA | rnfE | DR97_4435 | DR97_4430 | Na+-translocating ferredoxin:nad+ oxidoreductase subunit a; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane | Na+-translocating ferredoxin:nad+ oxidoreductase subunit e; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane | 0.951 |
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