STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnfENa+-translocating ferredoxin:nad+ oxidoreductase subunit e; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane (238 aa)    
Predicted Functional Partners:
rnfG
Na+-translocating ferredoxin:nad+ oxidoreductase subunit g; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane
 
 0.999
rnfD
Na+-translocating ferredoxin:nad+ oxidoreductase subunit d; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane
 
 
 0.999
rnfC
Na+-translocating ferredoxin:nad+ oxidoreductase subunit c; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane
 
 
 0.998
rnfB
Na+-translocating ferredoxin:nad+ oxidoreductase subunit b; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane
 
  
 0.993
nth
Endonuclease iii; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate
 
  
 0.969
nqrB
Na+-transporting nadh:ubiquinone oxidoreductase subunit b; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
 
  
 0.956
rnfA
Na+-translocating ferredoxin:nad+ oxidoreductase subunit a; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane
 
 
0.951
nqrF
Na+-transporting nadh:ubiquinone oxidoreductase subunit f; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. The first step is catalyzed by NqrF, which accepts electrons from NADH and reduces ubiquinone-1 to ubisemiquinone by a one-electron transfer pathway
  
  
 0.925
nqrC
Na+-transporting nadh:ubiquinone oxidoreductase subunit c; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
 
  
 0.912
YhiH
Putative atp-binding/permease fusion abc transporter; ccmA: heme ABC exporter, ATP-binding protein CcmA
      
 0.858
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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