Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DR97_2040 | MioC | DR97_2040 | DR97_4487 | annotation not available | Flavodoxin family protein; Probable electron transporter | 0.529 |
DR97_3846 | MioC | DR97_3846 | DR97_4487 | annotation not available | Flavodoxin family protein; Probable electron transporter | 0.525 |
MioC | DR97_2040 | DR97_4487 | DR97_2040 | Flavodoxin family protein; Probable electron transporter | annotation not available | 0.529 |
MioC | DR97_3846 | DR97_4487 | DR97_3846 | Flavodoxin family protein; Probable electron transporter | annotation not available | 0.525 |
MioC | dnaA | DR97_4487 | DR97_2950 | Flavodoxin family protein; Probable electron transporter | Chromosomal replication initiator protein dnaa; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids (By similarity) | 0.496 |
MioC | folM | DR97_4487 | DR97_4485 | Flavodoxin family protein; Probable electron transporter | annotation not available | 0.520 |
MioC | folX | DR97_4487 | DR97_4483 | Flavodoxin family protein; Probable electron transporter | annotation not available | 0.513 |
MioC | gidA | DR97_4487 | DR97_2944 | Flavodoxin family protein; Probable electron transporter | Trna uridine 5-carboxymethylaminomethyl modification enzyme gida; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 | 0.766 |
MioC | gidB | DR97_4487 | DR97_2943 | Flavodoxin family protein; Probable electron transporter | 16S rRNA (guanine(527)-N(7))-methyltransferase GidB; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA | 0.513 |
MioC | oadA | DR97_4487 | DR97_2812 | Flavodoxin family protein; Probable electron transporter | oadA: oxaloacetate decarboxylase alpha subunit | 0.508 |
MioC | polA | DR97_4487 | DR97_2871 | Flavodoxin family protein; Probable electron transporter | In addition to polymerase activity, this DNA polymerase exhibits 3'-5' and 5'-3' exonuclease activity | 0.499 |
MioC | tpx | DR97_4487 | DR97_5639 | Flavodoxin family protein; Probable electron transporter | Thioredoxin-dependent peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides | 0.647 |
dnaA | MioC | DR97_2950 | DR97_4487 | Chromosomal replication initiator protein dnaa; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids (By similarity) | Flavodoxin family protein; Probable electron transporter | 0.496 |
dnaA | gidA | DR97_2950 | DR97_2944 | Chromosomal replication initiator protein dnaa; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids (By similarity) | Trna uridine 5-carboxymethylaminomethyl modification enzyme gida; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 | 0.943 |
dnaA | gidB | DR97_2950 | DR97_2943 | Chromosomal replication initiator protein dnaa; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids (By similarity) | 16S rRNA (guanine(527)-N(7))-methyltransferase GidB; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA | 0.838 |
dnaA | polA | DR97_2950 | DR97_2871 | Chromosomal replication initiator protein dnaa; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids (By similarity) | In addition to polymerase activity, this DNA polymerase exhibits 3'-5' and 5'-3' exonuclease activity | 0.896 |
folM | MioC | DR97_4485 | DR97_4487 | annotation not available | Flavodoxin family protein; Probable electron transporter | 0.520 |
folM | folX | DR97_4485 | DR97_4483 | annotation not available | annotation not available | 0.995 |
folX | MioC | DR97_4483 | DR97_4487 | annotation not available | Flavodoxin family protein; Probable electron transporter | 0.513 |
folX | folM | DR97_4483 | DR97_4485 | annotation not available | annotation not available | 0.995 |
page 1 of 2