Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| DR97_1522 | DR97_3945 | DR97_1522 | DR97_3945 | Hypothetical protein; Amidase | annotation not available | 0.707 |
| DR97_1522 | DR97_4502 | DR97_1522 | DR97_4502 | Hypothetical protein; Amidase | Tetratricopeptide repeat family protein; Belongs to the UPF0162 family | 0.626 |
| DR97_1522 | alg44 | DR97_1522 | DR97_4400 | Hypothetical protein; Amidase | Alginate biosynthesis protein alg44; Required for alginate biosynthesis | 0.779 |
| DR97_1522 | algE | DR97_1522 | DR97_4398 | Hypothetical protein; Amidase | Alginate production outer membrane protein; Has non-porin-like, channel-forming properties and probably functions as an alginate permeability pore | 0.779 |
| DR97_1522 | algF | DR97_1522 | DR97_4392 | Hypothetical protein; Amidase | Alginate o-acetyl transferase algf family protein; Together with AlgI and AlgJ, forms an inner membrane complex which probably interacts with the alginate polymerization-transport complex and adds acetyl groups at the O-2 and O-3 positions of mannuronate residues. Acetylation of alginate is important for the architecture of biofilms and increases resistance to opsonic killing in the host | 0.780 |
| DR97_1522 | algG | DR97_1522 | DR97_4397 | Hypothetical protein; Amidase | Poly(beta-d-mannuronate) c5 epimerase; Catalyzes the epimerization of beta-D-mannuronate to alpha-L- guluronate during the synthesis of the linear polysaccharide alginate . In addition, is part of a periplasmic protein complex that protects alginate from degradation by AlgL by channeling the newly formed alginate polymer through a scaffold that transfers the alginate polymer through the periplasmic space to the outer membrane secretin AlgE | 0.779 |
| DR97_1522 | algK | DR97_1522 | DR97_4399 | Hypothetical protein; Amidase | Alginate biosynthesis protein algk; May be involved in the polymerization of mannuronate to alginate | 0.781 |
| DR97_1522 | algL | DR97_1522 | DR97_4395 | Hypothetical protein; Amidase | Poly(beta-d-mannuronate) lyase; Catalyzes the depolymerization of alginate by cleaving the beta-1,4 glycosidic bond between two adjacent sugar residues via a beta-elimination mechanism May serve to degrade mislocalized alginate that is trapped in the periplasmic space. Acts preferentially on non-acetylated alginate or its precursor mannuronan. Is able to catalyze cleavage adjacent to either mannuronate or guluronate residues in alginate. Exhaustive digestion of alginate by AlgL generates dimeric and trimeric products . In addition to its enzymatic function, AlgL appears to be required [...] | 0.771 |
| DR97_1522 | algX | DR97_1522 | DR97_4396 | Hypothetical protein; Amidase | Putative alginate biosynthesis protein algx; Plays two roles in the biosynthesis of the exopolysaccharide alginate: protects alginate from degradation as the polymer traverses the periplasm, and also plays a role in its O-acetylation. Acetylation of alginate causes the cells in the biofilm to adhere better to lung epithelium, form microcolonies, and resist the effects of the host immune system and/or antibiotics. Displays a low acetylesterase activity in vitro using a pseudosubstrate, 3-carboxyumbelliferyl acetate. Probably has acetyltransferase activity in vivo | 0.772 |
| DR97_3800 | DR97_4502 | DR97_3800 | DR97_4502 | annotation not available | Tetratricopeptide repeat family protein; Belongs to the UPF0162 family | 0.511 |
| DR97_3945 | DR97_1522 | DR97_3945 | DR97_1522 | annotation not available | Hypothetical protein; Amidase | 0.707 |
| DR97_3945 | DR97_4502 | DR97_3945 | DR97_4502 | annotation not available | Tetratricopeptide repeat family protein; Belongs to the UPF0162 family | 0.496 |
| DR97_3945 | alg44 | DR97_3945 | DR97_4400 | annotation not available | Alginate biosynthesis protein alg44; Required for alginate biosynthesis | 0.689 |
| DR97_3945 | algE | DR97_3945 | DR97_4398 | annotation not available | Alginate production outer membrane protein; Has non-porin-like, channel-forming properties and probably functions as an alginate permeability pore | 0.747 |
| DR97_3945 | algF | DR97_3945 | DR97_4392 | annotation not available | Alginate o-acetyl transferase algf family protein; Together with AlgI and AlgJ, forms an inner membrane complex which probably interacts with the alginate polymerization-transport complex and adds acetyl groups at the O-2 and O-3 positions of mannuronate residues. Acetylation of alginate is important for the architecture of biofilms and increases resistance to opsonic killing in the host | 0.732 |
| DR97_3945 | algG | DR97_3945 | DR97_4397 | annotation not available | Poly(beta-d-mannuronate) c5 epimerase; Catalyzes the epimerization of beta-D-mannuronate to alpha-L- guluronate during the synthesis of the linear polysaccharide alginate . In addition, is part of a periplasmic protein complex that protects alginate from degradation by AlgL by channeling the newly formed alginate polymer through a scaffold that transfers the alginate polymer through the periplasmic space to the outer membrane secretin AlgE | 0.721 |
| DR97_3945 | algK | DR97_3945 | DR97_4399 | annotation not available | Alginate biosynthesis protein algk; May be involved in the polymerization of mannuronate to alginate | 0.733 |
| DR97_3945 | algL | DR97_3945 | DR97_4395 | annotation not available | Poly(beta-d-mannuronate) lyase; Catalyzes the depolymerization of alginate by cleaving the beta-1,4 glycosidic bond between two adjacent sugar residues via a beta-elimination mechanism May serve to degrade mislocalized alginate that is trapped in the periplasmic space. Acts preferentially on non-acetylated alginate or its precursor mannuronan. Is able to catalyze cleavage adjacent to either mannuronate or guluronate residues in alginate. Exhaustive digestion of alginate by AlgL generates dimeric and trimeric products . In addition to its enzymatic function, AlgL appears to be required [...] | 0.707 |
| DR97_3945 | algX | DR97_3945 | DR97_4396 | annotation not available | Putative alginate biosynthesis protein algx; Plays two roles in the biosynthesis of the exopolysaccharide alginate: protects alginate from degradation as the polymer traverses the periplasm, and also plays a role in its O-acetylation. Acetylation of alginate causes the cells in the biofilm to adhere better to lung epithelium, form microcolonies, and resist the effects of the host immune system and/or antibiotics. Displays a low acetylesterase activity in vitro using a pseudosubstrate, 3-carboxyumbelliferyl acetate. Probably has acetyltransferase activity in vivo | 0.648 |
| DR97_4502 | DR97_1522 | DR97_4502 | DR97_1522 | Tetratricopeptide repeat family protein; Belongs to the UPF0162 family | Hypothetical protein; Amidase | 0.626 |
page 1 of 5
