STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phnJAlpha-d-ribose 1-methylphosphonate 5-phosphate c-p lyase; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1- methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose (294 aa)    
Predicted Functional Partners:
phnG
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnG; phnG_redo: phosphonate C-P lyase system protein PhnG
 
 0.999
phnH
Alpha-d-ribose 1-methylphosphonate 5-triphosphate synthase subunit phnh; Carbon-phosphorus lyase complex subunit; phnH_redo: phosphonate C-P lyase system protein PhnH
 
 0.999
PhnI
annotation not available
 
 0.999
phnK
Putative phosphonates utilization ATP-binding protein PhnK; CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
 0.999
phnM
Alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase; phosphono_phnM: phosphonate metabolism protein PhnM
 
 
 0.999
phnF
Gntr family transcriptional regulator, phosphonate transport system regulatory protein; Transcriptional regulator; C_P_lyase_phnF: phosphonate metabolism transcriptional regulator PhnF
 
  
 0.998
phnL
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL; CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
  
 0.998
phnN
Phosphonate metabolism protein/1,5-bisphosphokinase (prpp-forming) phnn; Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
 
  
 0.998
phnP
Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase; phnP: phosphonate metabolism protein PhnP
 
 
 0.997
PhnD
phnD: phosphonate ABC transporter, periplasmic phosphonate binding protein
 
  
 0.990
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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