STRINGSTRING
DR97_4623 protein (Pseudomonas aeruginosa) - STRING interaction network
"DR97_4623" - annotation not available in Pseudomonas aeruginosa
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DR97_4623annotation not available (37 aa)    
Predicted Functional Partners:
rapA
RNA polymerase-associated protein RapA; Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair (948 aa)
         
  0.884
sbcD
Nuclease SbcCD subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3’->5’ double strand exonuclease that can open hairpins. It also has a 5’ single-strand endonuclease activity (409 aa)
           
  0.853
orn
Oligoribonuclease; 3’-to-5’ exoribonuclease specific for small oligoribonucleotides (180 aa)
           
  0.832
sbcC
Nuclease sbcCD subunit C; recF/RecN/SMC N terminal domain protein (1211 aa)
           
  0.774
DR97_4620
Uncharacterized protein (102 aa)
 
          0.719
DR97_3270
annotation not available (191 aa)
   
          0.597
DR97_224
Uncharacterized protein (46 aa)
   
          0.593
DR97_232
impA-related N-terminal family protein (518 aa)
   
          0.583
DR97_2098
DUF4149 domain-containing protein (135 aa)
   
          0.576
DR97_229
annotation not available (135 aa)
   
          0.560
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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