lhr1 protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

lhr1

annotation not available (1302 aa)

Predicted Functional Partners:

DR97_4658

0.989

DR97_2681

0.857

DEGP1

0.854

algW

0.629

DR97_1654

0.514

tldD

0.483

DR97_4656

0.462

DR97_4657

0.434

pmbA

0.426

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

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TSV: tab separated values - can be opened in Excel

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DEGP1	DR97_2681	DR97_1338	DR97_2681	annotation not available	annotation not available	0.439
DEGP1	lhr1	DR97_1338	DR97_4659	annotation not available	annotation not available	0.854
DR97_1654	lhr1	DR97_1654	DR97_4659	annotation not available	annotation not available	0.514
DR97_1654	pmbA	DR97_1654	DR97_1651	annotation not available	annotation not available	0.548
DR97_1654	tldD	DR97_1654	DR97_1653	annotation not available	annotation not available	0.958
DR97_2681	DEGP1	DR97_2681	DR97_1338	annotation not available	annotation not available	0.439
DR97_2681	lhr1	DR97_2681	DR97_4659	annotation not available	annotation not available	0.857
DR97_4656	DR97_4657	DR97_4656	DR97_4657	Putative secreted protein	Uncharacterized protein	0.739
DR97_4656	DR97_4658	DR97_4656	DR97_4658	Putative secreted protein	annotation not available	0.505
DR97_4656	lhr1	DR97_4656	DR97_4659	Putative secreted protein	annotation not available	0.462
DR97_4657	DR97_4656	DR97_4657	DR97_4656	Uncharacterized protein	Putative secreted protein	0.739
DR97_4657	DR97_4658	DR97_4657	DR97_4658	Uncharacterized protein	annotation not available	0.631
DR97_4657	lhr1	DR97_4657	DR97_4659	Uncharacterized protein	annotation not available	0.434
DR97_4658	DR97_4656	DR97_4658	DR97_4656	annotation not available	Putative secreted protein	0.505
DR97_4658	DR97_4657	DR97_4658	DR97_4657	annotation not available	Uncharacterized protein	0.631
DR97_4658	lhr1	DR97_4658	DR97_4659	annotation not available	annotation not available	0.989
algW	lhr1	DR97_1624	DR97_4659	annotation not available	annotation not available	0.629
lhr1	DEGP1	DR97_4659	DR97_1338	annotation not available	annotation not available	0.854
lhr1	DR97_1654	DR97_4659	DR97_1654	annotation not available	annotation not available	0.514
lhr1	DR97_2681	DR97_4659	DR97_2681	annotation not available	annotation not available	0.857

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