DR97_4672 protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

DR97_4672

annotation not available (248 aa)

Predicted Functional Partners:

DR97_4674

0.643

DR97_4676

0.593

DR97_4675

0.593

DR97_816

0.482

mexR

0.412

DR97_4719

0.407

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_4672	DR97_4674	DR97_4672	DR97_4674	annotation not available	annotation not available	0.643
DR97_4672	DR97_4675	DR97_4672	DR97_4675	annotation not available	Uncharacterized protein	0.593
DR97_4672	DR97_4676	DR97_4672	DR97_4676	annotation not available	annotation not available	0.593
DR97_4672	DR97_4719	DR97_4672	DR97_4719	annotation not available	Conserved hypothetical protein	0.407
DR97_4672	DR97_816	DR97_4672	DR97_816	annotation not available	Uncharacterized protein	0.482
DR97_4672	mexR	DR97_4672	DR97_3392	annotation not available	annotation not available	0.412
DR97_4674	DR97_4672	DR97_4674	DR97_4672	annotation not available	annotation not available	0.643
DR97_4674	DR97_4675	DR97_4674	DR97_4675	annotation not available	Uncharacterized protein	0.965
DR97_4674	DR97_4676	DR97_4674	DR97_4676	annotation not available	annotation not available	0.893
DR97_4675	DR97_4672	DR97_4675	DR97_4672	Uncharacterized protein	annotation not available	0.593
DR97_4675	DR97_4674	DR97_4675	DR97_4674	Uncharacterized protein	annotation not available	0.965
DR97_4675	DR97_4676	DR97_4675	DR97_4676	Uncharacterized protein	annotation not available	0.906
DR97_4676	DR97_4672	DR97_4676	DR97_4672	annotation not available	annotation not available	0.593
DR97_4676	DR97_4674	DR97_4676	DR97_4674	annotation not available	annotation not available	0.893
DR97_4676	DR97_4675	DR97_4676	DR97_4675	annotation not available	Uncharacterized protein	0.906
DR97_4719	DR97_4672	DR97_4719	DR97_4672	Conserved hypothetical protein	annotation not available	0.407
DR97_816	DR97_4672	DR97_816	DR97_4672	Uncharacterized protein	annotation not available	0.482
mexR	DR97_4672	DR97_3392	DR97_4672	annotation not available	annotation not available	0.412

Network

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Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

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