gap1 protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

gap1

GAPDH-I- glyceraldehyde-3-phosphate dehydrogenase, type I; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family (334 aa)

Predicted Functional Partners:

pgk

0.998

tpiA

0.997

pgi

0.991

fba

0.989

zwf1

0.962

eno

0.962

zwf3

0.953

gapB

0.936

tkt

0.933

tal

0.932

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
eno	fba	DR97_4304	DR97_3524	Enolase; Eno- phosphopyruvate hydratase	fruBisAldo_II_B- fructose-bisphosphate aldolase, class II, Calvin cycle subtype	0.982
eno	gap1	DR97_4304	DR97_4741	Enolase; Eno- phosphopyruvate hydratase	GAPDH-I- glyceraldehyde-3-phosphate dehydrogenase, type I; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family	0.962
eno	gapB	DR97_4304	DR97_6109	Enolase; Eno- phosphopyruvate hydratase	annotation not available	0.869
eno	pgi	DR97_4304	DR97_2075	Enolase; Eno- phosphopyruvate hydratase	annotation not available	0.996
eno	pgk	DR97_4304	DR97_3521	Enolase; Eno- phosphopyruvate hydratase	annotation not available	0.998
eno	tal	DR97_4304	DR97_5147	Enolase; Eno- phosphopyruvate hydratase	Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway	0.955
eno	tkt	DR97_4304	DR97_3517	Enolase; Eno- phosphopyruvate hydratase	Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate	0.968
eno	tpiA	DR97_4304	DR97_2092	Enolase; Eno- phosphopyruvate hydratase	Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family	0.991
eno	zwf1	DR97_4304	DR97_4753	Enolase; Eno- phosphopyruvate hydratase	Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone	0.897
eno	zwf3	DR97_4304	DR97_2817	Enolase; Eno- phosphopyruvate hydratase	Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone	0.897
fba	eno	DR97_3524	DR97_4304	fruBisAldo_II_B- fructose-bisphosphate aldolase, class II, Calvin cycle subtype	Enolase; Eno- phosphopyruvate hydratase	0.982
fba	gap1	DR97_3524	DR97_4741	fruBisAldo_II_B- fructose-bisphosphate aldolase, class II, Calvin cycle subtype	GAPDH-I- glyceraldehyde-3-phosphate dehydrogenase, type I; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family	0.989
fba	gapB	DR97_3524	DR97_6109	fruBisAldo_II_B- fructose-bisphosphate aldolase, class II, Calvin cycle subtype	annotation not available	0.909
fba	pgi	DR97_3524	DR97_2075	fruBisAldo_II_B- fructose-bisphosphate aldolase, class II, Calvin cycle subtype	annotation not available	0.990
fba	pgk	DR97_3524	DR97_3521	fruBisAldo_II_B- fructose-bisphosphate aldolase, class II, Calvin cycle subtype	annotation not available	0.991
fba	tal	DR97_3524	DR97_5147	fruBisAldo_II_B- fructose-bisphosphate aldolase, class II, Calvin cycle subtype	Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway	0.965
fba	tkt	DR97_3524	DR97_3517	fruBisAldo_II_B- fructose-bisphosphate aldolase, class II, Calvin cycle subtype	Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate	0.979
fba	tpiA	DR97_3524	DR97_2092	fruBisAldo_II_B- fructose-bisphosphate aldolase, class II, Calvin cycle subtype	Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family	0.997
fba	zwf1	DR97_3524	DR97_4753	fruBisAldo_II_B- fructose-bisphosphate aldolase, class II, Calvin cycle subtype	Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone	0.905
fba	zwf3	DR97_3524	DR97_2817	fruBisAldo_II_B- fructose-bisphosphate aldolase, class II, Calvin cycle subtype	Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone	0.905

page 1 of 6

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2019

Credits

Access

Info

About