STRINGSTRING
ompR1 protein (Pseudomonas aeruginosa) - STRING interaction network
"ompR1" - Transcriptional regulatory , C terminal family protein in Pseudomonas aeruginosa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ompR1Transcriptional regulatory , C terminal family protein (242 aa)    
Predicted Functional Partners:
DR97_4745
annotation not available (473 aa)
 
  0.972
glk
Glk- glucokinase; Belongs to the bacterial glucokinase family (331 aa)
   
   
  0.904
amgS
annotation not available (439 aa)
 
  0.879
gacS
annotation not available (925 aa)
 
0.867
gltS
Sodium/glutamate symporter; Catalyzes the sodium-dependent transport of glutamate (404 aa)
           
  0.756
ptxS
annotation not available (340 aa)
           
  0.755
DR97_3759
annotation not available (1417 aa)
 
0.755
kinB
Alginate biosynthesis sensor protein KinB; Member of the two-component regulatory system AlgB/KinB involved in regulation of alginate biosynthesis genes. KinB functions as a membrane-associated protein kinase that phosphorylates AlgB, probably in response to environmental signals (595 aa)
 
  0.730
bvgS
annotation not available (1212 aa)
   
 
  0.724
DR97_4892
annotation not available (741 aa)
 
  0.722
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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