vipA protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

vipA

UDP-glucose/GDP-mannose dehydrogenase-like protein; NDP-sugDHase: nucleotide sugar dehydrogenase family protein; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family (422 aa)

Predicted Functional Partners:

wbgU

0.997

vgrG1

0.857

hcpA1

0.857

pppA

0.856

hcp1

0.856

clpV1-2

0.854

clpV1-1

0.854

clpV1-3

0.854

DR97_4784

0.851

DR97_638

0.847

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_4784	vipA	DR97_4784	DR97_4777	annotation not available	UDP-glucose/GDP-mannose dehydrogenase-like protein; NDP-sugDHase: nucleotide sugar dehydrogenase family protein; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family	0.851
DR97_4784	wbgU	DR97_4784	DR97_4778	annotation not available	annotation not available	0.852
DR97_638	vipA	DR97_638	DR97_4777	annotation not available	UDP-glucose/GDP-mannose dehydrogenase-like protein; NDP-sugDHase: nucleotide sugar dehydrogenase family protein; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family	0.847
DR97_638	wbgU	DR97_638	DR97_4778	annotation not available	annotation not available	0.836
clpV1-1	clpV1-2	DR97_3047	DR97_226	VI_ClpV1: type VI secretion ATPase, ClpV1 family	VI_ClpV1: type VI secretion ATPase, ClpV1 family; Belongs to the ClpA/ClpB family	0.810
clpV1-1	clpV1-3	DR97_3047	DR97_6061	VI_ClpV1: type VI secretion ATPase, ClpV1 family	VI_ClpV1: type VI secretion ATPase, ClpV1 family	0.809
clpV1-1	hcp1	DR97_3047	DR97_3042	VI_ClpV1: type VI secretion ATPase, ClpV1 family	annotation not available	0.948
clpV1-1	hcpA1	DR97_3047	DR97_510	VI_ClpV1: type VI secretion ATPase, ClpV1 family	annotation not available	0.867
clpV1-1	pppA	DR97_3047	DR97_3032	VI_ClpV1: type VI secretion ATPase, ClpV1 family	annotation not available	0.953
clpV1-1	vgrG1	DR97_3047	DR97_3048	VI_ClpV1: type VI secretion ATPase, ClpV1 family	VgrG1; vgr_GE: Rhs element Vgr family protein	0.995
clpV1-1	vipA	DR97_3047	DR97_4777	VI_ClpV1: type VI secretion ATPase, ClpV1 family	UDP-glucose/GDP-mannose dehydrogenase-like protein; NDP-sugDHase: nucleotide sugar dehydrogenase family protein; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family	0.854
clpV1-1	wbgU	DR97_3047	DR97_4778	VI_ClpV1: type VI secretion ATPase, ClpV1 family	annotation not available	0.863
clpV1-2	clpV1-1	DR97_226	DR97_3047	VI_ClpV1: type VI secretion ATPase, ClpV1 family; Belongs to the ClpA/ClpB family	VI_ClpV1: type VI secretion ATPase, ClpV1 family	0.810
clpV1-2	clpV1-3	DR97_226	DR97_6061	VI_ClpV1: type VI secretion ATPase, ClpV1 family; Belongs to the ClpA/ClpB family	VI_ClpV1: type VI secretion ATPase, ClpV1 family	0.814
clpV1-2	hcp1	DR97_226	DR97_3042	VI_ClpV1: type VI secretion ATPase, ClpV1 family; Belongs to the ClpA/ClpB family	annotation not available	0.749
clpV1-2	hcpA1	DR97_226	DR97_510	VI_ClpV1: type VI secretion ATPase, ClpV1 family; Belongs to the ClpA/ClpB family	annotation not available	0.951
clpV1-2	pppA	DR97_226	DR97_3032	VI_ClpV1: type VI secretion ATPase, ClpV1 family; Belongs to the ClpA/ClpB family	annotation not available	0.881
clpV1-2	vgrG1	DR97_226	DR97_3048	VI_ClpV1: type VI secretion ATPase, ClpV1 family; Belongs to the ClpA/ClpB family	VgrG1; vgr_GE: Rhs element Vgr family protein	0.890
clpV1-2	vipA	DR97_226	DR97_4777	VI_ClpV1: type VI secretion ATPase, ClpV1 family; Belongs to the ClpA/ClpB family	UDP-glucose/GDP-mannose dehydrogenase-like protein; NDP-sugDHase: nucleotide sugar dehydrogenase family protein; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family	0.854
clpV1-2	wbgU	DR97_226	DR97_4778	VI_ClpV1: type VI secretion ATPase, ClpV1 family; Belongs to the ClpA/ClpB family	annotation not available	0.863

page 1 of 4

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About