STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DR97_4792Drug resistance mfs transporter, drug:h+ antiporter-2 family protein; Belongs to the major facilitator superfamily (519 aa)    
Predicted Functional Partners:
Mdr
Membrane fusion protein, multidrug efflux system; Uncharacterized protein; RND_mfp: efflux transporter, RND family, MFP subunit
 
 
 0.985
DR97_697
Membrane fusion protein, multidrug efflux system; Putative multidrug resistance efflux pump; RND_mfp: efflux transporter, RND family, MFP subunit
 
 
 0.869
TrpB
Membrane fusion protein, multidrug efflux system; Secretion protein; RND_mfp: efflux transporter, RND family, MFP subunit
 
 
 0.858
EmrA
Membrane fusion protein, multidrug efflux system; Multidrug resistance protein A; RND_mfp: efflux transporter, RND family, MFP subunit
 
 
 0.838
DR97_4567
Inner membrane protein YiaV; RND_mfp: efflux transporter, RND family, MFP subunit
 
 
 0.752
DR97_6003
Uncharacterized protein; RND_mfp: efflux transporter, RND family, MFP subunit
 
 
 0.638
Act
Bacterial regulatory helix-turn-helix , lysr family protein; Belongs to the LysR transcriptional regulatory family
  
    0.631
DR97_4627
Efflux transporter, rnd family, mfp subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
 
 
 0.621
pepN
pepN_proteo: aminopeptidase N
    
  0.555
gltX
Glutamyl-trna synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
       0.528
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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