STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phnXPhosphonoacetaldehyde hydrolase; Involved in phosphonate degradation (275 aa)    
Predicted Functional Partners:
phnW
2-aminoethylphosphonate-pyruvate transaminase; Involved in phosphonate degradation
 
 0.999
DR97_3176
4-(gamma-glutamylamino)butanal dehydrogenase; Belongs to the aldehyde dehydrogenase family
  
 
  0.902
PhnD
phnD: phosphonate ABC transporter, periplasmic phosphonate binding protein
     
 0.873
dehII
HAD_type_II: haloacid dehalogenase, type II
   
 
 0.867
DR97_4614
Uncharacterized protein; 3A0109s03R: phosphate/phosphite/phosphonate ABC transporters, periplasmic binding family protein
     
 0.859
phnJ
Alpha-d-ribose 1-methylphosphonate 5-phosphate c-p lyase; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1- methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose
      
 0.849
phnC
Atp-binding component of abc phosphonate transporter; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
     
 0.733
phnE
phnE: phosphonate ABC transporter, permease protein PhnE
     
 0.710
DR97_4611
phnE: phosphonate ABC transporter, permease protein PhnE
     
 0.710
PhnR
Aminoethylphosphonate catabolism associated lysr transcriptional regulator family protein; Belongs to the LysR transcriptional regulatory family
 
     0.698
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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