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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xcpSgspF: type II secretion system protein F (405 aa)    
Predicted Functional Partners:
xcpR1
type_II_gspE: type II secretion system protein E
 
 
 0.997
DR97_4832
typeII_sec_gspG: type II secretion system protein G
 
  
 0.994
gspJ
gspJ: type II secretion system protein J
 
  
 0.993
xcpV
gspI: type II secretion system protein I
 
  
 0.991
gspL
Type II secretion system protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
 
  
 0.985
xcpU
typeII_sec_gspH: type II secretion system protein H
 
  
 0.984
xcpR3
type_II_gspE: type II secretion system protein E
 
 
 0.983
epsE_1
Type II secretion system (T2SS), E, N-terminal domain protein
 
 
 0.982
xcpT_3
typeII_sec_gspG: type II secretion system protein G
 
  
 0.975
xcpT_2
typeII_sec_gspG: type II secretion system protein G
 
  
 0.970
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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