pelA protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

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Cooccurence

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[Homology]

Score

pelA

Uncharacterized protein (948 aa)

Predicted Functional Partners:

pelD

0.993

pelF

0.993

pelG

0.993

pelE

0.993

pelB

0.993

pelC

0.987

pslA

0.857

pslG

0.713

pleD_6

0.712

pslD

0.636

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

Export your current network:

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... as simple tabular text output:

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TSV: tab separated values - can be opened in Excel

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
pelA	pelB	DR97_4872	DR97_4873	Uncharacterized protein	annotation not available	0.993
pelA	pelC	DR97_4872	DR97_4874	Uncharacterized protein	annotation not available	0.987
pelA	pelD	DR97_4872	DR97_4875	Uncharacterized protein	annotation not available	0.993
pelA	pelE	DR97_4872	DR97_4876	Uncharacterized protein	Uncharacterized protein	0.993
pelA	pelF	DR97_4872	DR97_4877	Uncharacterized protein	annotation not available	0.993
pelA	pelG	DR97_4872	DR97_4878	Uncharacterized protein	annotation not available	0.993
pelA	pleD_6	DR97_4872	DR97_3125	Uncharacterized protein	Response regulator PleD; GGDEF- diguanylate cyclase domain protein	0.712
pelA	pslA	DR97_4872	DR97_6320	Uncharacterized protein	Putative glycosyl transferase; wcaJ_sugtrans- undecaprenyl-phosphate glucose phosphotransferase	0.857
pelA	pslD	DR97_4872	DR97_6317	Uncharacterized protein	annotation not available	0.636
pelA	pslG	DR97_4872	DR97_6314	Uncharacterized protein	annotation not available	0.713
pelB	pelA	DR97_4873	DR97_4872	annotation not available	Uncharacterized protein	0.993
pelB	pelC	DR97_4873	DR97_4874	annotation not available	annotation not available	0.994
pelB	pelD	DR97_4873	DR97_4875	annotation not available	annotation not available	0.991
pelB	pelE	DR97_4873	DR97_4876	annotation not available	Uncharacterized protein	0.988
pelB	pelF	DR97_4873	DR97_4877	annotation not available	annotation not available	0.991
pelB	pelG	DR97_4873	DR97_4878	annotation not available	annotation not available	0.983
pelB	pslA	DR97_4873	DR97_6320	annotation not available	Putative glycosyl transferase; wcaJ_sugtrans- undecaprenyl-phosphate glucose phosphotransferase	0.442
pelC	pelA	DR97_4874	DR97_4872	annotation not available	Uncharacterized protein	0.987
pelC	pelB	DR97_4874	DR97_4873	annotation not available	annotation not available	0.994
pelC	pelD	DR97_4874	DR97_4875	annotation not available	annotation not available	0.997

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