pelB protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

pelB

annotation not available (1193 aa)

Predicted Functional Partners:

pelC

0.994

pelA

0.993

pelD

0.991

pelF

0.991

pelE

0.988

pelG

0.983

DR97_3832

0.653

DR97_2046

0.618

DR97_5232

0.573

DR97_875

0.562

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

Export your current network:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

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TSV: tab separated values - can be opened in Excel

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_2046	pelB	DR97_2046	DR97_4873	annotation not available	annotation not available	0.618
DR97_3832	DR97_5232	DR97_3832	DR97_5232	annotation not available	annotation not available	0.522
DR97_3832	pelA	DR97_3832	DR97_4872	annotation not available	Uncharacterized protein	0.493
DR97_3832	pelB	DR97_3832	DR97_4873	annotation not available	annotation not available	0.653
DR97_3832	pelC	DR97_3832	DR97_4874	annotation not available	annotation not available	0.480
DR97_3832	pelD	DR97_3832	DR97_4875	annotation not available	annotation not available	0.543
DR97_3832	pelE	DR97_3832	DR97_4876	annotation not available	Uncharacterized protein	0.500
DR97_3832	pelG	DR97_3832	DR97_4878	annotation not available	annotation not available	0.412
DR97_5232	DR97_3832	DR97_5232	DR97_3832	annotation not available	annotation not available	0.522
DR97_5232	DR97_875	DR97_5232	DR97_875	annotation not available	annotation not available	0.463
DR97_5232	pelB	DR97_5232	DR97_4873	annotation not available	annotation not available	0.573
DR97_875	DR97_5232	DR97_875	DR97_5232	annotation not available	annotation not available	0.463
DR97_875	pelB	DR97_875	DR97_4873	annotation not available	annotation not available	0.562
pelA	DR97_3832	DR97_4872	DR97_3832	Uncharacterized protein	annotation not available	0.493
pelA	pelB	DR97_4872	DR97_4873	Uncharacterized protein	annotation not available	0.993
pelA	pelC	DR97_4872	DR97_4874	Uncharacterized protein	annotation not available	0.987
pelA	pelD	DR97_4872	DR97_4875	Uncharacterized protein	annotation not available	0.993
pelA	pelE	DR97_4872	DR97_4876	Uncharacterized protein	Uncharacterized protein	0.993
pelA	pelF	DR97_4872	DR97_4877	Uncharacterized protein	annotation not available	0.993
pelA	pelG	DR97_4872	DR97_4878	Uncharacterized protein	annotation not available	0.993

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