Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| fimX | fleQ | DR97_2312 | DR97_840 | GGDEF: diguanylate cyclase domain protein | Sigma-54 dependent transcriptional regulator, flagellar regulatory protein; AAA+ ATPase enhancer-binding protein that acts as a transcription regulator and plays a role in the modulation of mucin adhesion and flagellar gene expression In addition to flagella genes, regulates also expression of biofilm-related genes . Functions as a transcriptional repressor in the absence of c-di-GMP and as an activator when c-di-GMP is present | 0.889 |
| fimX | lapD | DR97_2312 | DR97_590 | GGDEF: diguanylate cyclase domain protein | annotation not available | 0.664 |
| fimX | pelD | DR97_2312 | DR97_4875 | GGDEF: diguanylate cyclase domain protein | annotation not available | 0.911 |
| fimX | wspR | DR97_2312 | DR97_4175 | GGDEF: diguanylate cyclase domain protein | Two-component system, chemotaxis family, response regulator wspr; Two-component response regulator; GGDEF: diguanylate cyclase domain protein | 0.919 |
| fleQ | fimX | DR97_840 | DR97_2312 | Sigma-54 dependent transcriptional regulator, flagellar regulatory protein; AAA+ ATPase enhancer-binding protein that acts as a transcription regulator and plays a role in the modulation of mucin adhesion and flagellar gene expression In addition to flagella genes, regulates also expression of biofilm-related genes . Functions as a transcriptional repressor in the absence of c-di-GMP and as an activator when c-di-GMP is present | GGDEF: diguanylate cyclase domain protein | 0.889 |
| fleQ | lapD | DR97_840 | DR97_590 | Sigma-54 dependent transcriptional regulator, flagellar regulatory protein; AAA+ ATPase enhancer-binding protein that acts as a transcription regulator and plays a role in the modulation of mucin adhesion and flagellar gene expression In addition to flagella genes, regulates also expression of biofilm-related genes . Functions as a transcriptional repressor in the absence of c-di-GMP and as an activator when c-di-GMP is present | annotation not available | 0.865 |
| fleQ | pelA | DR97_840 | DR97_4872 | Sigma-54 dependent transcriptional regulator, flagellar regulatory protein; AAA+ ATPase enhancer-binding protein that acts as a transcription regulator and plays a role in the modulation of mucin adhesion and flagellar gene expression In addition to flagella genes, regulates also expression of biofilm-related genes . Functions as a transcriptional repressor in the absence of c-di-GMP and as an activator when c-di-GMP is present | Polysaccharide biosynthesis protein pela; Uncharacterized protein | 0.673 |
| fleQ | pelD | DR97_840 | DR97_4875 | Sigma-54 dependent transcriptional regulator, flagellar regulatory protein; AAA+ ATPase enhancer-binding protein that acts as a transcription regulator and plays a role in the modulation of mucin adhesion and flagellar gene expression In addition to flagella genes, regulates also expression of biofilm-related genes . Functions as a transcriptional repressor in the absence of c-di-GMP and as an activator when c-di-GMP is present | annotation not available | 0.871 |
| fleQ | wspR | DR97_840 | DR97_4175 | Sigma-54 dependent transcriptional regulator, flagellar regulatory protein; AAA+ ATPase enhancer-binding protein that acts as a transcription regulator and plays a role in the modulation of mucin adhesion and flagellar gene expression In addition to flagella genes, regulates also expression of biofilm-related genes . Functions as a transcriptional repressor in the absence of c-di-GMP and as an activator when c-di-GMP is present | Two-component system, chemotaxis family, response regulator wspr; Two-component response regulator; GGDEF: diguanylate cyclase domain protein | 0.874 |
| lapD | fimX | DR97_590 | DR97_2312 | annotation not available | GGDEF: diguanylate cyclase domain protein | 0.664 |
| lapD | fleQ | DR97_590 | DR97_840 | annotation not available | Sigma-54 dependent transcriptional regulator, flagellar regulatory protein; AAA+ ATPase enhancer-binding protein that acts as a transcription regulator and plays a role in the modulation of mucin adhesion and flagellar gene expression In addition to flagella genes, regulates also expression of biofilm-related genes . Functions as a transcriptional repressor in the absence of c-di-GMP and as an activator when c-di-GMP is present | 0.865 |
| lapD | pelD | DR97_590 | DR97_4875 | annotation not available | annotation not available | 0.877 |
| lapD | wspR | DR97_590 | DR97_4175 | annotation not available | Two-component system, chemotaxis family, response regulator wspr; Two-component response regulator; GGDEF: diguanylate cyclase domain protein | 0.493 |
| pelA | fleQ | DR97_4872 | DR97_840 | Polysaccharide biosynthesis protein pela; Uncharacterized protein | Sigma-54 dependent transcriptional regulator, flagellar regulatory protein; AAA+ ATPase enhancer-binding protein that acts as a transcription regulator and plays a role in the modulation of mucin adhesion and flagellar gene expression In addition to flagella genes, regulates also expression of biofilm-related genes . Functions as a transcriptional repressor in the absence of c-di-GMP and as an activator when c-di-GMP is present | 0.673 |
| pelA | pelB | DR97_4872 | DR97_4873 | Polysaccharide biosynthesis protein pela; Uncharacterized protein | annotation not available | 0.998 |
| pelA | pelC | DR97_4872 | DR97_4874 | Polysaccharide biosynthesis protein pela; Uncharacterized protein | annotation not available | 0.992 |
| pelA | pelD | DR97_4872 | DR97_4875 | Polysaccharide biosynthesis protein pela; Uncharacterized protein | annotation not available | 0.993 |
| pelA | pelE | DR97_4872 | DR97_4876 | Polysaccharide biosynthesis protein pela; Uncharacterized protein | Polysaccharide biosynthesis protein pele; Uncharacterized protein | 0.993 |
| pelA | pelF | DR97_4872 | DR97_4877 | Polysaccharide biosynthesis protein pela; Uncharacterized protein | annotation not available | 0.993 |
| pelA | pelG | DR97_4872 | DR97_4878 | Polysaccharide biosynthesis protein pela; Uncharacterized protein | annotation not available | 0.993 |
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