STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OpdQannotation not available (421 aa)    
Predicted Functional Partners:
dctP
Trap transporter solute receptor, dctp family protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system DctPQM involved in C4-dicarboxylates uptake
   
  
 0.799
madM
malonate_madM: malonate transporter, MadM subunit
   
  
 0.721
madL
malonate_madL: malonate transporter, MadL subunit
   
  
 0.710
DR97_4927
annotation not available
  
     0.680
pcaT
Mfs transporter, mhs family, dicarboxylic acid transporter pcat; Dicarboxylic acid transporter PcaT; 2A0106: MFS transporter, metabolite:H+ symporter family protein
      
 0.674
DR97_4428
Hypothetical protein; Leucyl-tRNA synthetase
  
     0.644
DR97_489
Hypothetical protein; MFS transporter
  
     0.614
DR97_1536
annotation not available
  
     0.596
DR97_4033
Hypothetical protein; DNA polymerase III subunit chi
  
     0.593
DR97_5138
Hypothetical protein; Chromosome partitioning protein ParA
  
    0.584
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.