fadA protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

fadA

3-ketoacyl-CoA thiolase; Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed (391 aa)

Predicted Functional Partners:

fadB

0.999

DR97_149

0.996

fadE

0.989

Gcdh

0.936

echs1

0.933

DR97_2375

0.919

HMGCL

0.914

mmsA1

0.912

mmsA3

0.912

iolA2

0.912

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_149	DR97_2375	DR97_149	DR97_2375	annotation not available	acyl-CoA dehydrogenase, N-terminal domain protein	0.948
DR97_149	Gcdh	DR97_149	DR97_3413	annotation not available	Glutaryl-CoA dehydrogenase, mitochondrial; acyl-CoA dehydrogenase, N-terminal domain protein	0.938
DR97_149	fadA	DR97_149	DR97_4924	annotation not available	3-ketoacyl-CoA thiolase; Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed	0.996
DR97_149	fadB	DR97_149	DR97_4923	annotation not available	Fatty acid oxidation complex subunit alpha; Involved in the aerobic and anaerobic degradation of long-chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate; In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family	0.940
DR97_149	fadE	DR97_149	DR97_5128	annotation not available	acyl-CoA dehydrogenase, N-terminal domain protein	0.991
DR97_149	iolA2	DR97_149	DR97_3087	annotation not available	MMSDH- methylmalonate-semialdehyde dehydrogenase	0.918
DR97_149	mmsA1	DR97_149	DR97_4369	annotation not available	MMSDH- methylmalonate-semialdehyde dehydrogenase	0.918
DR97_149	mmsA3	DR97_149	DR97_1237	annotation not available	MMSDH- methylmalonate-semialdehyde dehydrogenase	0.918
DR97_2375	DR97_149	DR97_2375	DR97_149	acyl-CoA dehydrogenase, N-terminal domain protein	annotation not available	0.948
DR97_2375	Gcdh	DR97_2375	DR97_3413	acyl-CoA dehydrogenase, N-terminal domain protein	Glutaryl-CoA dehydrogenase, mitochondrial; acyl-CoA dehydrogenase, N-terminal domain protein	0.910
DR97_2375	fadA	DR97_2375	DR97_4924	acyl-CoA dehydrogenase, N-terminal domain protein	3-ketoacyl-CoA thiolase; Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed	0.919
DR97_2375	fadB	DR97_2375	DR97_4923	acyl-CoA dehydrogenase, N-terminal domain protein	Fatty acid oxidation complex subunit alpha; Involved in the aerobic and anaerobic degradation of long-chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate; In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family	0.946
DR97_2375	fadE	DR97_2375	DR97_5128	acyl-CoA dehydrogenase, N-terminal domain protein	acyl-CoA dehydrogenase, N-terminal domain protein	0.811
Gcdh	DR97_149	DR97_3413	DR97_149	Glutaryl-CoA dehydrogenase, mitochondrial; acyl-CoA dehydrogenase, N-terminal domain protein	annotation not available	0.938
Gcdh	DR97_2375	DR97_3413	DR97_2375	Glutaryl-CoA dehydrogenase, mitochondrial; acyl-CoA dehydrogenase, N-terminal domain protein	acyl-CoA dehydrogenase, N-terminal domain protein	0.910
Gcdh	echs1	DR97_3413	DR97_4348	Glutaryl-CoA dehydrogenase, mitochondrial; acyl-CoA dehydrogenase, N-terminal domain protein	annotation not available	0.516
Gcdh	fadA	DR97_3413	DR97_4924	Glutaryl-CoA dehydrogenase, mitochondrial; acyl-CoA dehydrogenase, N-terminal domain protein	3-ketoacyl-CoA thiolase; Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed	0.936
Gcdh	fadB	DR97_3413	DR97_4923	Glutaryl-CoA dehydrogenase, mitochondrial; acyl-CoA dehydrogenase, N-terminal domain protein	Fatty acid oxidation complex subunit alpha; Involved in the aerobic and anaerobic degradation of long-chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate; In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family	0.938
Gcdh	fadE	DR97_3413	DR97_5128	Glutaryl-CoA dehydrogenase, mitochondrial; acyl-CoA dehydrogenase, N-terminal domain protein	acyl-CoA dehydrogenase, N-terminal domain protein	0.917
HMGCL	fadA	DR97_5837	DR97_4924	annotation not available	3-ketoacyl-CoA thiolase; Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed	0.914

page 1 of 4

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About