ugpQ protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

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[Homology]

Score

ugpQ

annotation not available (240 aa)

Predicted Functional Partners:

glpQ

0.972

DR97_4949

0.912

eutB

0.900

eutC

0.900

DR97_1327

0.851

DR97_2136

0.851

DR97_4950

0.834

DR97_6080

0.825

clsA

0.788

DR97_867

0.716

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_1327	glpQ	DR97_1327	DR97_3313	Cardiolipin synthetase; Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol	annotation not available	0.646
DR97_1327	ugpQ	DR97_1327	DR97_4948	Cardiolipin synthetase; Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol	annotation not available	0.851
DR97_2136	DR97_6080	DR97_2136	DR97_6080	annotation not available	annotation not available	0.818
DR97_2136	eutB	DR97_2136	DR97_3843	annotation not available	annotation not available	0.900
DR97_2136	eutC	DR97_2136	DR97_3842	annotation not available	annotation not available	0.900
DR97_2136	glpQ	DR97_2136	DR97_3313	annotation not available	annotation not available	0.800
DR97_2136	ugpQ	DR97_2136	DR97_4948	annotation not available	annotation not available	0.851
DR97_4949	DR97_4950	DR97_4949	DR97_4950	Phosphodiesterase	annotation not available	0.891
DR97_4949	ugpQ	DR97_4949	DR97_4948	Phosphodiesterase	annotation not available	0.912
DR97_4950	DR97_4949	DR97_4950	DR97_4949	annotation not available	Phosphodiesterase	0.891
DR97_4950	ugpQ	DR97_4950	DR97_4948	annotation not available	annotation not available	0.834
DR97_6080	DR97_2136	DR97_6080	DR97_2136	annotation not available	annotation not available	0.818
DR97_6080	eutB	DR97_6080	DR97_3843	annotation not available	annotation not available	0.900
DR97_6080	eutC	DR97_6080	DR97_3842	annotation not available	annotation not available	0.900
DR97_6080	glpQ	DR97_6080	DR97_3313	annotation not available	annotation not available	0.824
DR97_6080	ugpQ	DR97_6080	DR97_4948	annotation not available	annotation not available	0.825
DR97_867	glpQ	DR97_867	DR97_3313	Acetyl-CoA carboxylase alpha subunit	annotation not available	0.554
DR97_867	ugpQ	DR97_867	DR97_4948	Acetyl-CoA carboxylase alpha subunit	annotation not available	0.716
clsA	glpQ	DR97_2770	DR97_3313	Cardiolipin synthase A; Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol	annotation not available	0.646
clsA	ugpQ	DR97_2770	DR97_4948	Cardiolipin synthase A; Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol	annotation not available	0.788

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