Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DR97_493 | DR97_494 | DR97_493 | DR97_494 | annotation not available | Rna polymerase sigma factor, sigma-70 family protein; Belongs to the sigma-70 factor family. ECF subfamily | 0.991 |
DR97_493 | YcgN | DR97_493 | DR97_495 | annotation not available | Putative zinc-/iron-chelating domain protein; Belongs to the UPF0260 family | 0.716 |
DR97_493 | rcnR | DR97_493 | DR97_496 | annotation not available | annotation not available | 0.411 |
DR97_494 | DR97_493 | DR97_494 | DR97_493 | Rna polymerase sigma factor, sigma-70 family protein; Belongs to the sigma-70 factor family. ECF subfamily | annotation not available | 0.991 |
DR97_494 | YcgN | DR97_494 | DR97_495 | Rna polymerase sigma factor, sigma-70 family protein; Belongs to the sigma-70 factor family. ECF subfamily | Putative zinc-/iron-chelating domain protein; Belongs to the UPF0260 family | 0.655 |
DR97_494 | rcnR | DR97_494 | DR97_496 | Rna polymerase sigma factor, sigma-70 family protein; Belongs to the sigma-70 factor family. ECF subfamily | annotation not available | 0.404 |
DR97_497 | YcgN | DR97_497 | DR97_495 | Uncharacterized protein; CDF: cation diffusion facilitator transporter family protein | Putative zinc-/iron-chelating domain protein; Belongs to the UPF0260 family | 0.469 |
DR97_497 | rcnR | DR97_497 | DR97_496 | Uncharacterized protein; CDF: cation diffusion facilitator transporter family protein | annotation not available | 0.960 |
DR97_4985 | YcgN | DR97_4985 | DR97_495 | Uncharacterized protein; Proteophosphoglycan | Putative zinc-/iron-chelating domain protein; Belongs to the UPF0260 family | 0.452 |
YcgL | YcgN | DR97_499 | DR97_495 | annotation not available | Putative zinc-/iron-chelating domain protein; Belongs to the UPF0260 family | 0.498 |
YcgL | recF | DR97_499 | DR97_2952 | annotation not available | Dna replication and repair recf family protein; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP (By similarity) | 0.421 |
YcgL | rnd | DR97_499 | DR97_500 | annotation not available | Ribonuclease d; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides | 0.957 |
YcgN | DR97_493 | DR97_495 | DR97_493 | Putative zinc-/iron-chelating domain protein; Belongs to the UPF0260 family | annotation not available | 0.716 |
YcgN | DR97_494 | DR97_495 | DR97_494 | Putative zinc-/iron-chelating domain protein; Belongs to the UPF0260 family | Rna polymerase sigma factor, sigma-70 family protein; Belongs to the sigma-70 factor family. ECF subfamily | 0.655 |
YcgN | DR97_497 | DR97_495 | DR97_497 | Putative zinc-/iron-chelating domain protein; Belongs to the UPF0260 family | Uncharacterized protein; CDF: cation diffusion facilitator transporter family protein | 0.469 |
YcgN | DR97_4985 | DR97_495 | DR97_4985 | Putative zinc-/iron-chelating domain protein; Belongs to the UPF0260 family | Uncharacterized protein; Proteophosphoglycan | 0.452 |
YcgN | YcgL | DR97_495 | DR97_499 | Putative zinc-/iron-chelating domain protein; Belongs to the UPF0260 family | annotation not available | 0.498 |
YcgN | rcnR | DR97_495 | DR97_496 | Putative zinc-/iron-chelating domain protein; Belongs to the UPF0260 family | annotation not available | 0.637 |
YcgN | recF | DR97_495 | DR97_2952 | Putative zinc-/iron-chelating domain protein; Belongs to the UPF0260 family | Dna replication and repair recf family protein; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP (By similarity) | 0.518 |
YcgN | ribD | DR97_495 | DR97_3811 | Putative zinc-/iron-chelating domain protein; Belongs to the UPF0260 family | Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate | 0.552 |
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