ycgN protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ycgN

annotation not available (149 aa)

Predicted Functional Partners:

DR97_493

0.716

rnd

0.707

fecI_2

0.655

rcnR

0.637

ribD

0.552

recF

0.518

DR97_499

0.498

DR97_497

0.469

DR97_4985

0.452

mazG

0.442

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_493	fecI_2	DR97_493	DR97_494	annotation not available	sigma70-ECF- RNA polymerase sigma factor, sigma-70 family protein	0.991
DR97_493	rcnR	DR97_493	DR97_496	annotation not available	annotation not available	0.411
DR97_493	ycgN	DR97_493	DR97_495	annotation not available	annotation not available	0.716
DR97_497	rcnR	DR97_497	DR97_496	Uncharacterized protein; CDF- cation diffusion facilitator transporter family protein	annotation not available	0.888
DR97_497	rnd	DR97_497	DR97_500	Uncharacterized protein; CDF- cation diffusion facilitator transporter family protein	Ribonuclease D; Exonuclease involved in the 3’ processing of various precursor tRNAs. Initiates hydrolysis at the 3’-terminus of an RNA molecule and releases 5’-mononucleotides; Belongs to the RNase D family	0.434
DR97_497	ycgN	DR97_497	DR97_495	Uncharacterized protein; CDF- cation diffusion facilitator transporter family protein	annotation not available	0.469
DR97_4985	ycgN	DR97_4985	DR97_495	Proteophosphoglycan	annotation not available	0.452
DR97_499	recF	DR97_499	DR97_2952	annotation not available	DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP	0.457
DR97_499	rnd	DR97_499	DR97_500	annotation not available	Ribonuclease D; Exonuclease involved in the 3’ processing of various precursor tRNAs. Initiates hydrolysis at the 3’-terminus of an RNA molecule and releases 5’-mononucleotides; Belongs to the RNase D family	0.957
DR97_499	ycgN	DR97_499	DR97_495	annotation not available	annotation not available	0.498
fecI_2	DR97_493	DR97_494	DR97_493	sigma70-ECF- RNA polymerase sigma factor, sigma-70 family protein	annotation not available	0.991
fecI_2	rcnR	DR97_494	DR97_496	sigma70-ECF- RNA polymerase sigma factor, sigma-70 family protein	annotation not available	0.404
fecI_2	ycgN	DR97_494	DR97_495	sigma70-ECF- RNA polymerase sigma factor, sigma-70 family protein	annotation not available	0.655
mazG	ycgN	DR97_1004	DR97_495	Nucleoside triphosphate pyrophosphohydrolase; mazG- MazG family protein	annotation not available	0.442
rcnR	DR97_493	DR97_496	DR97_493	annotation not available	annotation not available	0.411
rcnR	DR97_497	DR97_496	DR97_497	annotation not available	Uncharacterized protein; CDF- cation diffusion facilitator transporter family protein	0.888
rcnR	fecI_2	DR97_496	DR97_494	annotation not available	sigma70-ECF- RNA polymerase sigma factor, sigma-70 family protein	0.404
rcnR	ycgN	DR97_496	DR97_495	annotation not available	annotation not available	0.637
recF	DR97_499	DR97_2952	DR97_499	DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP	annotation not available	0.457
recF	rnd	DR97_2952	DR97_500	DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP	Ribonuclease D; Exonuclease involved in the 3’ processing of various precursor tRNAs. Initiates hydrolysis at the 3’-terminus of an RNA molecule and releases 5’-mononucleotides; Belongs to the RNase D family	0.511

page 1 of 2

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About